Synthesizing developmental trajectories. - Paul Villoutreix; Joakim Andén; Bomyi Lim; Hang Lu; Ioannis G. Kevrekidis; Amit Singer; Stanislav Y. Shvartsman (PLoS Comput. Biol., 2017)

Kernel transfer over multiple views for missing data completion. - Riikka Huusari; Cécile Capponi; Paul Villoutreix; Hachem Kadri (CoRR, 2019)

Random walk informed community detection reveals heterogeneities in large networks. - Solène Song; Malek Senoussi; Paul Escande; Paul Villoutreix (CoRR, 2022)

Cross-View kernel transfer. - Riikka Huusari; Cécile Capponi; Paul Villoutreix; Hachem Kadri (Pattern Recognit., 2022)

Random walk informed heterogeneity detection reveals how the lymph node conduit network influences T cells collective exploration behavior. - Solène Song; Malek Senoussi; Paul Escande; Paul Villoutreix (PLoS Comput. Biol., 2023)

Hierarchical novel class discovery for single-cell transcriptomic profiles. - Malek Senoussi; Thierry Artières; Paul Villoutreix (CoRR, 2024)

Partial label learning for automated classification of single-cell transcriptomic profiles. - Malek Senoussi; Thierry Artières; Paul Villoutreix (PLoS Comput. Biol., 2024)

MODIS: Multi-Omics Data Integration for Small and Unpaired Datasets. - Daniel Lepe-Soltero; Thierry Artières; Anaïs Baudot; Paul Villoutreix (CoRR, 2025)