miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. - Paul Wei-Che Hsu; Hsien-Da Huang; Sheng-Da Hsu; Li-Zen Lin; Ann-Ping Tsou; Ching-Ping Tseng; Peter F. Stadler; Stefan Washietl; Ivo L. Hofacker (Nucleic Acids Res., 2006)

ViTa: prediction of host microRNAs targets on viruses. - Paul Wei-Che Hsu; Li-Zen Lin; Sheng-Da Hsu; Justin Bo-Kai Hsu; Hsien-Da Huang (Nucleic Acids Res., 2007)

miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. - Sheng-Da Hsu; Chia-Huei Chu; Ann-Ping Tsou; Shu-Jen Chen; Hua-Chien Chen; Paul Wei-Che Hsu; Yung-Hao Wong; Yi-Hsuan Chen; Gian-Hung Chen; Hsien-Da Huang (Nucleic Acids Res., 2008)

Epigenetic profiling of DNA methylation changes associated with chronic alcohol consumption: A 12-year follow-up study. - Julia Tzu-Ya Weng; Lawrence Shih-Hsin Wu; Yi-Cheng Chen; Paul Wei-Che Hsu; Chau-Shoun Lee; Andrew T. A. Cheng (BMEI, 2013)

Integrative epigenetic profiling analysis identifies DNA methylation changes associated with chronic alcohol consumption. - Julia Tzu-Ya Weng; Lawrence Shih-Hsin Wu; Chau-Shoun Lee; Paul Wei-Che Hsu; Andrew T. A. Cheng (Comput. Biol. Medicine, 2015)

Discovering a trans-omics biomarker signature that predisposes high risk diabetic patients to diabetic kidney disease. - I-Wen Wu; Tsung-Hsien Tsai; Chi-Jen Lo; Yi-Ju Chou; Chi-Hsiao Yeh; Yun-Hsuan Chan; Jun-Hong Chen; Paul Wei-Che Hsu; Heng-Chih Pan; Heng-Jung Hsu; Chun-Yu Chen; Chin-Chan Lee; et al. (npj Digit. Medicine, 2022)