The UniProt-GO Annotation database in 2011. - Emily C. Dimmer; Rachael P. Huntley; Yasmin Alam-Faruque; Tony Sawford; Claire O'Donovan; Maria Jesus Martin; Benoit Bely; Paul Browne; Wei Mun Chan; Ruth Y. Eberhardt; Michael Gardner; Kati Laiho; et al. (Nucleic Acids Res., 2012)

neXtProt: a knowledge platform for human proteins. - Lydie Lane; Ghislaine Argoud-Puy; Aurore Britan; Isabelle Cusin; Paula Duek Roggli; Olivier Evalet; Alain Gateau; Pascale Gaudet; Anne Gleizes; Alexandre Masselot; Catherine Zwahlen; Amos Bairoch (Nucleic Acids Res., 2012)

The neXtProt knowledgebase on human proteins: current status. - Pascale Gaudet; Pierre-André Michel; Monique Zahn-Zabal; Isabelle Cusin; Paula Duek Roggli; Olivier Evalet; Alain Gateau; Anne Gleizes; Mario Pereira; Daniel Dinis Teixeira; Ying Zhang; Lydie Lane; et al. (Nucleic Acids Res., 2015)

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows. - Olivier Sallou; Paula Duek Roggli; Thomas A. Darde; Olivier Collin; Lydie Lane; Frédéric Chalmel (Database J. Biol. Databases Curation, 2016)

The neXtProt knowledgebase on human proteins: 2017 update. - Pascale Gaudet; Pierre-André Michel; Monique Zahn-Zabal; Aurore Britan; Isabelle Cusin; Marcin Domagalski; Paula Duek Roggli; Alain Gateau; Anne Gleizes; Valérie Hinard; Valentine Rech de Laval; JinJin Lin; et al. (Nucleic Acids Res., 2017)

The ABCD database: a repository for chemically defined antibodies. - Wanessa C. Lima; Elisabeth Gasteiger; Paolo Marcatili; Paula Duek Roggli; Amos Bairoch; Pierre Cosson (Nucleic Acids Res., 2020)

The neXtProt knowledgebase in 2020: data, tools and usability improvements. - Monique Zahn-Zabal; Pierre-André Michel; Alain Gateau; Frédéric Nikitin; Mathieu Schaeffer; Estelle Audot; Pascale Gaudet; Paula Duek Roggli; Daniel Dinis Teixeira; Valentine Rech de Laval; Kasun Samarasinghe; Amos Bairoch; et al. (Nucleic Acids Res., 2020)

Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students. - Paula Duek Roggli; Camille Mary; Monique Zahn-Zabal; Amos Bairoch; Lydie Lane (Database J. Biol. Databases Curation, 2021)

Protein function prediction as approximate semantic entailment. - Maxat Kulmanov; Francisco J. Guzmán-Vega; Paula Duek Roggli; Lydie Lane; Stefan T. Arold; Robert Hoehndorf (Nat. Mac. Intell., 2024)