MicroRNA Target Prediction and Exploration through Candidate Binding Sites Generation. - Paula Helena Reyes-Herrera; Andrea Acquaviva; Elisa Ficarra; Enrico Macii (CISIS, 2010)

miREE: miRNA Recognition Elements Ensemble. - Paula Helena Reyes-Herrera; Elisa Ficarra; Andrea Acquaviva; Enrico Macii (BMC Bioinform., 2011)

One Decade of Development and Evolution of MicroRNA Target Prediction Algorithms. - Paula Helena Reyes-Herrera; Elisa Ficarra (Genom. Proteom. Bioinform., 2012)

Modeling, design and development of bioinformatic techniques to integrate heterogeneous data in order to solve problems of systems biology. - Paula Helena Reyes-Herrera (2012)

BackCLIP: a tool to identify common background presence in PAR-CLIP datasets. - Paula Helena Reyes-Herrera; C. A. Speck-Hernandez; Carlos Andrés Sierra; S. Herrera (Bioinform., 2015)