A model study on biomorphological description. - Paulien Hogeweg; Ben Hesper (Pattern Recognit., 1974)

Oligothetic characterisation of clusters. - Paulien Hogeweg; Ben Hesper (Pattern Recognit., 1981)

Energy directed folding of RNA sequences. - Paulien Hogeweg; Ben Hesper (Nucleic Acids Res., 1984)

Mirror Beyond Mirror: Puddles of Life. - Paulien Hogeweg (ALIFE, 1987)

Genetic Algorithms and Information Accumulation during the Evolution of Gene Regulation. - Martijn A. Huynen; Paulien Hogeweg (ICGA, 1989)

Redundant Coding of an NP-Complete Problem Allows Effective Genetic Algorithm Search. - Marleen Gerrits; Paulien Hogeweg (PPSN, 1990)

Evolutionary Dynamics and the Coding Structure of Sequences: Multiple Coding as a Consequence of Crossover and High Mutation Rates. - Paulien Hogeweg; Ben Hesper (Comput. Chem., 1992)

Evolutionary Stagnation Due to Pattern-Pattern Interactions in a Coevolutionary Predator-Prey Model. - Nicholas J. Savill; Paulien Hogeweg (Artif. Life, 1997)

Evolutionary Consequences of Coevolving Targets. - Ludo Pagie; Paulien Hogeweg (Evol. Comput., 1997)

Evolution to Complexity: Replication, Elongation and Assembly in an RNA World. - Tomoyuki Yamamoto; Paulien Hogeweg (ECAL, 1999)

Information integration and red queen dynamics in coevolutionary optimization. - Ludo Pagie; Paulien Hogeweg (CEC, 2000)

Optimization as Side-Effect of Evolving Allelopathic Diversity. - Ludo Pagie; Paulien Hogeweg (PPSN, 2000)

Shapes in the Shadow: Evolutionary Dynamica of Morphogensis. - Paulien Hogeweg (Artif. Life, 2000)

Learning What to Eat: Studying Inter-relations Between Learning, Grouping, and Environmental Conditions in an Artificial World. - Daniel J. van der Post; Paulien Hogeweg (ACRI, 2004)

The RNA Silencing Pathway: The Bits and Pieces That Matter. - Marian Groenenboom; Athanasius F. M. Marée; Paulien Hogeweg (PLoS Comput. Biol., 2005)

Problem-Solving Environments for Biological Morphogenesis. - Roeland Merks; Alfons G. Hoekstra; Jaap A. Kaandorp; Peter M. A. Sloot; Paulien Hogeweg (Comput. Sci. Eng., 2006)

Moving Forward Moving Backward: Directional Sorting of Chemotactic Cells due to Size and Adhesion Differences. - Jos Käfer; Paulien Hogeweg; Athanasius F. M. Marée (PLoS Comput. Biol., 2006)

The role of speciation in spatial coevolutionary function approximation. - Folkert de Boer; Paulien Hogeweg (GECCO (Companion), 2007)

From population dynamics to ecoinformatics: Ecosystems as multilevel information processing systems. - Paulien Hogeweg (Ecol. Informatics, 2007)

The Effect of Stochasticity on the Lac Operon: An Evolutionary Perspective. - Milan van Hoek; Paulien Hogeweg (PLoS Comput. Biol., 2007)

Diet learning and the evolution of cultural inheritance. - Daniel J. van der Post; Bas Ursem; Paulien Hogeweg (ALIFE, 2008)

Evolution of complexity in RNA-like replicator systems. - Nobuto Takeuchi; Paulien Hogeweg (ALIFE, 2008)

Multilevel Modeling of Morphogenesis. - Paulien Hogeweg (Workshop on Membrane Computing, 2008)

The dynamics and efficacy of antiviral RNA silencing: A model study. - Marian Groenenboom; Paulien Hogeweg (BMC Syst. Biol., 2008)

RNA silencing can explain chlorotic infection patterns on plant leaves. - Marian Groenenboom; Paulien Hogeweg (BMC Syst. Biol., 2008)

Evolution of Evolvability in Gene Regulatory Networks. - Anton Crombach; Paulien Hogeweg (PLoS Comput. Biol., 2008)

Multilevel Selection in Models of Prebiotic Evolution II: A Direct Comparison of Compartmentalization and Spatial Self-Organization. - Nobuto Takeuchi; Paulien Hogeweg (PLoS Comput. Biol., 2009)

Multilevel Cellular Automata as a Tool for Studying Bioinformatic Processes. - Paulien Hogeweg (Simulating Complex Systems by Cellular Automata, 2010)

Is RNA-dependent RNA polymerase essential for transposon control? - Anton Crombach; Paulien Hogeweg (BMC Syst. Biol., 2011)

The Roots of Bioinformatics in Theoretical Biology. - Paulien Hogeweg (PLoS Comput. Biol., 2011)

On the Origin of DNA Genomes: Evolution of the Division of Labor between Template and Catalyst in Model Replicator Systems. - Nobuto Takeuchi; Paulien Hogeweg; Eugene V. Koonin (PLoS Comput. Biol., 2011)

Evolution of Networks for Body Plan Patterning; Interplay of Modularity, Robustness and Evolvability. - Kirsten H. ten Tusscher; Paulien Hogeweg (PLoS Comput. Biol., 2011)

Morphogengineering roots: comparing mechanisms of morphogen gradient formation. - Verônica A. Grieneisen; Ben Scheres; Paulien Hogeweg; Athanasius F. M. Marée (BMC Syst. Biol., 2012)

Co-evolution and ecosystem based problem solving. - Folkert de Boer; Paulien Hogeweg (Ecol. Informatics, 2012)

James A. Shapiro: Evolution: a view from the twenty-first century - FT Press Science, Upper Saddle River, New Jersey 07458, ISBN 10: 0-13278093-3. - Paulien Hogeweg (Evol. Intell., 2012)

A Synergism between Adaptive Effects and Evolvability Drives Whole Genome Duplication to Fixation. - Thomas D. Cuypers; Paulien Hogeweg (PLoS Comput. Biol., 2014)

Non-random random mutations: a signature of evolution of evolution (EVOEVO). - Paulien Hogeweg (ECAL, 2015)

Segment-Specific Adhesion as a Driver of Convergent Extension. - Renske M. A. Vroomans; Paulien Hogeweg; Kirsten H. W. J. ten Tusscher (PLoS Comput. Biol., 2015)

Parasites Sustain and Enhance RNA-Like Replicators through Spatial Self-Organisation. - Enrico Sandro Colizzi; Paulien Hogeweg (PLoS Comput. Biol., 2016)

Evolving Living Technologies - Insights from the EvoEvo Project. - Guillaume Beslon; Santiago F. Elena; Paulien Hogeweg; Dominique Schneider; Susan Stepney (SSBSE, 2018)

Intracellular signaling in proto-eukaryotes evolves to alleviate regulatory conflicts of endosymbiosis. - Samuel H. A. von der Dunk; Paulien Hogeweg; Berend Snel (PLoS Comput. Biol., 2024)