WinPop 2.5: Software for representing population genetics phenomena. - Paulo A. S. Nuin (Briefings Bioinform., 2005)

SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution. - Andy Pang; Andrew D. Smith; Paulo A. S. Nuin; Elisabeth R. M. Tillier (BMC Bioinform., 2005)

The accuracy of several multiple sequence alignment programs for proteins. - Paulo A. S. Nuin; Zhouzhi Wang; Elisabeth R. M. Tillier (BMC Bioinform., 2006)

Exploring high dimensional data with Butterfly: a novel classification algorithm based on discrete dynamical systems. - Joseph Geraci; Moyez Dharsee; Paulo A. S. Nuin; Alexandria Haslehurst; Madhuri Koti; Harriet E. Feilotter; Kenneth R. Evans (Bioinform., 2014)

WormBase 2016: expanding to enable helminth genomic research. - Kevin L. Howe; Bruce J. Bolt; Scott Cain; Juancarlos Chan; Wen J. Chen; Paul Davis 001; James Done; Thomas A. Down; Sibyl Gao; Christian A. Grove; Todd W. Harris; Ranjana Kishore; et al. (Nucleic Acids Res., 2016)

WormBase 2017: molting into a new stage. - Raymond Y. N. Lee; Kevin L. Howe; Todd W. Harris; Valerio Arnaboldi; Scott Cain; Juancarlos Chan; Wen J. Chen; Paul Davis 001; Sibyl Gao; Christian A. Grove; Ranjana Kishore; Hans-Michael Müller; et al. (Nucleic Acids Res., 2018)

WormBase: a modern Model Organism Information Resource. - Todd W. Harris; Valerio Arnaboldi; Scott Cain; Juancarlos Chan; Wen J. Chen; Jae-Hyoung Cho; Paul Davis 001; Sibyl Gao; Christian A. Grove; Ranjana Kishore; Raymond Y. N. Lee; Hans-Michael Müller; et al. (Nucleic Acids Res., 2020)