Evaluating Simulated Annealing Algorithms in the Optimization of Bacterial Strains. - Miguel Rocha 001; Rui Mendes 001; Paulo Maia; José P. Pinto; Isabel Rocha; Eugénio C. Ferreira (EPIA Workshops, 2007)

A platform for the selection of genes in DNA microarraydata using evolutionary algorithms. - Miguel Rocha 001; Rui Mendes 001; Paulo Maia; Daniel Glez-Peña; Florentino Fdez-Riverola (GECCO, 2007)

A framework for the development of Biomedical Text Mining software tools. - Anália Lourenço; Rafael Carreira; Sónia Carneiro; Paulo Maia; Daniel Glez-Peña; Florentino Fdez-Riverola; Eugénio C. Ferreira; Isabel Rocha; Miguel Rocha 001 (BIBE, 2008)

Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strains. - Paulo Maia; Isabel Rocha; Eugénio C. Ferreira; Miguel Rocha 001 (BIBE, 2008)

Natural computation meta-heuristics for the in silico optimization of microbial strains. - Miguel Rocha 001; Paulo Maia; Rui Mendes 001; José P. Pinto; Eugénio C. Ferreira; Jens Nielsen; Kiran Raosaheb Patil; Isabel Rocha (BMC Bioinform., 2008)

Implementing Metaheuristic Optimization Algorithms with JECoLi. - Pedro Evangelista; Paulo Maia; Miguel Rocha 001 (ISDA, 2009)

@Note: A workbench for Biomedical Text Mining. - Anália Lourenço; Rafael Carreira; Sónia Carneiro; Paulo Maia; Daniel Glez-Peña; Florentino Fdez-Riverola; Eugénio C. Ferreira; Isabel Rocha; Miguel Rocha 001 (J. Biomed. Informatics, 2009)

Metaheuristics for Strain Optimization Using Transcriptional Information Enriched Metabolic Models. - Paulo Vilaça; Paulo Maia; Isabel Rocha; Miguel Rocha 001 (EvoBIO, 2010)

Enhancing Elementary Flux Modes Analysis Using Filtering Techniques in an Integrated Environment. - Paulo Maia; Marcellinus Pont; Jean-François Tomb; Isabel Rocha; Miguel Rocha 001 (IWPACBB, 2010)

OptFlux: an open-source software platform for in silico metabolic engineering. - Isabel Rocha; Paulo Maia; Pedro Evangelista; Paulo Vilaça; Simão Soares; José P. Pinto; Jens Nielsen; Kiran Raosaheb Patil; Eugénio C. Ferreira; Miguel Rocha 001 (BMC Syst. Biol., 2010)

AIBench: A rapid application development framework for translational research in biomedicine. - Daniel Glez-Peña; Miguel Reboiro-Jato; Paulo Maia; Miguel Rocha 001; Fernando Díaz 001; Florentino Fdez-Riverola (Comput. Methods Programs Biomed., 2010)

A Software Platform for Evolutionary Computation with Pluggable Parallelism and Quality Assurance. - Pedro Evangelista; Jorge Henrique Martins de Pinho; Emanuel J. V. Gonçalves; Paulo Maia; João Luís Ferreira Sobral; Miguel Francisco de Almeida Pereira da Rocha (AIAI, 2011)

A Study on the Robustness of Strain Optimization Algorithms. - Paulo Vilaça; Paulo Maia; Miguel Rocha 001 (PACBB, 2011)

An integrated computational environment for elementary modes analysis of biochemical networks. - Paulo Maia; Paulo Vilaça; Isabel Rocha; Marcellinus Pont; Jean-François Tomb; Miguel Rocha 001 (Int. J. Data Min. Bioinform., 2012)

An integrated framework for strain optimization. - Paulo Maia; Isabel Rocha; Miguel Rocha 001 (IEEE Congress on Evolutionary Computation, 2013)

CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data. - Rafael Carreira; Pedro Evangelista; Paulo Maia; Paulo Vilaça; Marcellinus Pont; Jean-François Tomb; Isabel Rocha; Miguel Rocha 001 (BMC Syst. Biol., 2014)

Using Scrum Together with UML Models: A Collaborative University-Industry R&D Software Project. - Nuno Santos 002; João M. Fernandes 001; Maria Sameiro Carvalho; Pedro V. Silva; Fábio A. Fernandes; Márcio P. Rebelo; Diogo Barbosa; Paulo Maia; Marco Couto 001; Ricardo J. Machado 001 (ICCSA (4), 2016)

iFloW: An Integrated Logistics Software System for Inbound Supply Chain Traceability. - Nuno Santos 002; Diogo Barbosa; Paulo Maia; Fábio A. Fernandes; Márcio P. Rebelo; Pedro V. Silva; Maria Sameiro Carvalho; João M. Fernandes 001; Ricardo J. Machado 001 (I-ESA, 2016)

Development of an Integrated Framework for Minimal Cut Set Enumeration in Constraint-Based Models. - Vítor Vieira; Paulo Maia; Isabel Rocha; Miguel Rocha 001 (PACBB, 2016)

Identification of robust strain designs via tandem pFBA/LMOMA phenotype prediction. - Paulo Maia; Isabel Rocha; Miguel Rocha 001 (GECCO (Companion), 2017)

On the Fly Reporting of Human Body Movement based on Kinect v2. - Joana Rodrigues; Paulo Maia; Hugo Miguel Pereira Choupina; João Paulo da Silva Cunha (EMBC, 2018)

Occupational Exposure to Heat in Outdoor Activities in Building Constructions in Southeastern Brazil. - Adriana Amorim; Lucila Labaki; Paulo Maia; Thais Barros; Alex Marcelo (AHFE (18), 2019)

WAL: A Tool for Diagnosing Accessibility Issues and Evolving Legacy Web Systems at Runtime. - Wanessa Teotônio; Pablo Gonzalez; Paulo Maia; Pedro Muniz (SCAM, 2019)

Comparison of pathway analysis and constraint-based methods for cell factory design. - Vítor Vieira; Paulo Maia; Miguel Rocha 001; Isabel Rocha (BMC Bioinform., 2019)

Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli. - Paulo Maia; Gael Pérez Rodríguez; Martín Pérez-Pérez; Florentino Fdez-Riverola; Anália Lourenço; Nuno F. Azevedo (Comput. Biol. Medicine, 2019)

Non-involutive twist-structures. - Umberto Rivieccio; Paulo Maia; Achim Jung (Log. J. IGPL, 2020)

Applying Machine Learning for Traffic Forecasting in Porto, Portugal. - Paulo Maia; Joana Morgado; Tiago Gonçalves; Tomé Albuquerque (PKDD/ECML Workshops (2), 2021)

A Framework for Building pro-bono Data for Good Projects. - Miguel José Monteiro; Paulo Maia (PKDD/ECML Workshops (2), 2021)