Stochastic molecular optimization using generalized simulated annealing. - Marcelo A. Moret; Pedro Geraldo Pascutti; Paulo Mascarello Bisch; Kleber C. Mundim (J. Comput. Chem., 1998)

Polarization effects on peptide conformations at water-membrane interface by molecular dynamics simulation. - Pedro Geraldo Pascutti; Kleber C. Mundim; Amando S. Ito; Paulo Mascarello Bisch (J. Comput. Chem., 1999)

Reassociation of fragments using multicentered multipolar expansions: peptide junction treatments to investigate electrostatic properties of proteins. - Laurent Emmanuel Dardenne; Araken dos Santos Werneck; Març de Oliveira Neto; Paulo Mascarello Bisch (J. Comput. Chem., 2001)

Structural Genomic Workflows Supported by Web Services. - Maria Cláudia Cavalcanti; Fernanda Araújo Baião; Shaila C. Rössle; Paulo Mascarello Bisch; Rafael Targino; Paulo F. Pires; Maria Luiza Machado Campos; Marta Mattoso (DEXA Workshops, 2003)

Development of a Computational Environment for Protein Structure Prediction and Functional Analysis. - Shaila C. Rössle; Paulo Carvalho; Laurent Emmanuel Dardenne; Paulo Mascarello Bisch (WOB, 2003)

Data Management via Web Services in Bioinformatics Workflows. - Fabricio Teixeira; Maria Cláudia Cavalcanti; Fernanda Araújo Baião; Luiz A. V. C. Meyer; Shaila C. Rössle; Paulo Mascarello Bisch; Marta Mattoso (WOB, 2003)

Nonspecific interaction forces at water-membrane interface by forced molecular dynamics simulations. - Alicia C. Lorenzo; Pedro Geraldo Pascutti; Paulo Mascarello Bisch (J. Comput. Chem., 2003)

Parallelism in Bioinformatics Workflows. - Luiz A. V. C. Meyer; Shaila C. Rössle; Paulo Mascarello Bisch; Marta Mattoso (VECPAR, 2004)

Managing structural genomic workflows using Web services. - Maria Cláudia Cavalcanti; Rafael Targino; Fernanda Araújo Baião; Shaila C. Rössle; Paulo Mascarello Bisch; Paulo F. Pires; Maria Luiza Machado Campos; Marta Mattoso (Data Knowl. Eng., 2005)

Provenance Services for Distributed Workflows. - Sérgio Manuel Serra da Cruz; Patrícia M. Barros; Paulo Mascarello Bisch; Maria Luiza Machado Campos; Marta Mattoso (CCGRID, 2008)

Spatial Bistability Generates hunchback Expression Sharpness in the Drosophila Embryo. - Francisco J. P. Lopes; Fernando M. C. Vieira; David M. Holloway; Paulo Mascarello Bisch; Alexander V. Spirov (PLoS Comput. Biol., 2008)

A Provenance-Based Approach to Resource Discovery in Distributed Molecular Dynamics Workflows. - Sérgio Manuel Serra da Cruz; Patrícia M. Barros; Paulo Mascarello Bisch; Maria Luiza Machado Campos; Marta Mattoso (RED, 2009)

A Segmentation Method for Nuclei Identification from Sagittal Images of Drosophila melanogaster Embryos. - Daniela Justiniano de Sousa; Maira Arruda Cardoso; Paulo Mascarello Bisch; Francisco José Pereira Lopes; Bruno Augusto Nassif Travençolo (WSCG, 2013)

Automated standardization of images of Drosophila embryos. - Daniela Justiniano de Sousa; Maira Arruda Cardoso; Paulo Mascarello Bisch; Francisco José Pereira Lopes; Bruno Augusto Nassif Travençolo (J. Vis. Commun. Image Represent., 2020)

A reaction-diffusion network model predicts a dual role of Cactus/IκB to regulate Dorsal/NFκB nuclear translocation in Drosophila. - Claudio Daniel Tenorio de Barros; Maira Arruda Cardoso; Paulo Mascarello Bisch; Helena M. Araujo; Francisco J. P. Lopes (PLoS Comput. Biol., 2021)