Comparative genomics meets topology: a novel view on genome median and halving problems. - Nikita Alexeev; Pavel Avdeyev; Max A. Alekseyev (BMC Bioinform., 2016)

Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss. - Pavel Avdeyev; Shuai Jiang; Sergey Aganezov Jr.; Fei Hu; Max A. Alekseyev (J. Comput. Biol., 2016)

A Unified ILP Framework for Genome Median, Halving, and Aliquoting Problems Under DCJ. - Pavel Avdeyev; Nikita Alexeev; Yongwu Rong; Max A. Alekseyev (RECOMB-CG, 2017)

Implicit Transpositions in DCJ Scenarios. - Pavel Avdeyev; Shuai Jiang; Max A. Alekseyev (BCB, 2018)

A Rapid Exact Solution for the Guided Genome Halving Problem. - Anton Nekhai; Maria Atamanova; Pavel Avdeyev; Max A. Alekseyev (BCB, 2018)

A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving, and Aliquoting Problems. - Pavel Avdeyev; Maria Atamanova; Max A. Alekseyev (AlCoB, 2019)

Linearization of Ancestral Genomes with Duplicated Genes. - Pavel Avdeyev; Max A. Alekseyev (BCB, 2020)

A unified ILP framework for core ancestral genome reconstruction problems. - Pavel Avdeyev; Nikita Alexeev; Yongwu Rong; Max A. Alekseyev (Bioinform., 2020)

Biological computation and computational biology: survey, challenges, and discussion. - Zaineb Chelly Dagdia; Pavel Avdeyev; Md. Shamsuzzoha Bayzid (Artif. Intell. Rev., 2021)

Orienting Ordered Scaffolds: Complexity and Algorithms. - Sergey Aganezov; Pavel Avdeyev; Nikita Alexeev; Yongwu Rong; Max A. Alekseyev (SN Comput. Sci., 2022)

Dirichlet Diffusion Score Model for Biological Sequence Generation. - Pavel Avdeyev; Chenlai Shi; Yuhao Tan; Kseniia Dudnyk; Jian Zhou (ICML, 2023)