Spherical Object Reconstruction Using Star-Shaped Simplex Meshes. - Pavel Matula; David Svoboda (EMMCVPR, 2001)

High-Resolution Cytometry Network Project: Towards Remote a d Distributed Acquisition, Processing and Visualisation of 3D Image Data in Human Genome Research. - Michal Kozubek 001; Petr Matula; Pavel Matula; Petr Mejzlík (3DPVT, 2002)

Effectivity of Spherical Object Reconstruction Using Star -Shaped Simplex Meshes. - Pavel Matula (3DPVT, 2002)

Spherical Object Reconstruction Using Simplex Meshes from Sparse Data. - Pavel Matula; David Svoboda (DGCI, 2003)

Tissue Reconstruction Based on Deformation of Dual Simplex Meshes. - David Svoboda; Pavel Matula (DGCI, 2003)

High-Resolution Cytometry Network Project: Client/Server System for 3D Optical Microscope Data Storage and Analysis. - Pavel Matula; Petr Matula; Michal Kozubek 001; Petr Mejzlík (3DPVT, 2004)

Fast Marching 3D Reconstruction of Interphase Chromosomes. - Pavel Matula; Jan Hubený; Michal Kozubek 001 (ECCV Workshops CVAMIA and MMBIA, 2004)

Applications of Image Registration in Human Genome Research. - Petr Matula; Michal Kozubek 001; Pavel Matula (ECCV Workshops CVAMIA and MMBIA, 2004)

Automated Confocal Microscopy: The Way of Achieving both Quality and Quantity in 3D Image Cytometry. - Michal Kozubek 001; Petr Matula; Pavel Matula (ISBI, 2004)

Estimating large local motion in live-cell imaging using variational optical flow - towards motion tracking in live cell imaging using optical flow. - Jan Hubený; Vladimír Ulman; Pavel Matula (VISAPP (2), 2007)

A Fast Level Set-Like Algorithm with Topology Preserving Constraint. - Martin Maska; Pavel Matula (CAIP, 2009)

Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy. - Pavel Matula; Martin Maska; Ondrej Danek; Petr Matula; Michal Kozubek 001 (ISBI, 2009)

Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model. - Ondrej Danek; Pavel Matula; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia; Martin Maska; Michal Kozubek 001 (SCIA, 2009)

A Fast Level Set-Like Algorithm for Region-Based Active Contours. - Martin Maska; Pavel Matula; Ondrej Danek; Michal Kozubek 001 (ISVC (3), 2010)

Simultaneous Tracking of Multiple Objects Using Fast Level Set-Like Algorithm. - Martin Maska; Pavel Matula; Michal Kozubek 001 (MEMICS, 2010)

Graph Cuts and Approximation of the Euclidean Metric on Anisotropic Grids. - Ondrej Danek; Pavel Matula (VISAPP (2), 2010)

On Euclidean Metric Approximation via Graph Cuts. - Ondrej Danek; Pavel Matula (VISIGRAPP (Selected Papers), 2010)

An Improved Riemannian Metric Approximation for Graph Cuts. - Ondrej Danek; Pavel Matula (DGCI, 2011)

Smooth Chan-Vese segmentation via graph cuts. - Ondrej Danek; Pavel Matula; Martin Maska; Michal Kozubek 001 (Pattern Recognit. Lett., 2012)

Non-rigid contour-based temporal registration of 2D cell nuclei images using the Navier equation. - Dmitry V. Sorokin; Marco Tektonidis; Karl Rohr; Pavel Matula (ISBI, 2014)

A benchmark for comparison of cell tracking algorithms. - Martin Maska; Vladimír Ulman; David Svoboda; Pavel Matula; Petr Matula; Cristina Ederra; Ainhoa Urbiola; Tomás España; Subramanian Venkatesan 001; Deepak M. W. Balak; Pavel Karas; Tereza Bolcková; et al. (Bioinform., 2014)

Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy. - Karel Stepka; Martin Maska; Jakub Jozef Pálenik; Vendula Pospíchalová; Anna Kotrbová; Ladislav Ilkovics; Dobromila Klemová; Ales Hampl; Vítezslav Bryja; Pavel Matula (ECCV Workshops (1), 2016)

Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests. - Martin Maska; Pavel Matula (ICCV Workshops, 2017)

Non-Rigid Contour-Based Registration of Cell Nuclei in 2-D Live Cell Microscopy Images Using a Dynamic Elasticity Model. - Dmitry V. Sorokin; Igor Peterlík; Marco Tektonidis; Karl Rohr; Pavel Matula (IEEE Trans. Medical Imaging, 2018)