Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data. - Jirí Macas; Pavel Neumann; Petr Novák; Jiming Jiang (Bioinform., 2010)

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data. - Petr Novák; Pavel Neumann; Jirí Macas (BMC Bioinform., 2010)

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads. - Petr Novák; Pavel Neumann; Jirí Pech; Jaroslav Steinhaisl; Jirí Macas (Bioinform., 2013)