Finding least common ancestors in directed acyclic graphs. - Michael A. Bender; Giridhar Pemmasani; Steven Skiena; Pavel Sumazin (SODA, 2001)

A Time-Sensitive System for Black-Box Combinatorial Optimization. - Vinhthuy T. Phan; Pavel Sumazin; Steven Skiena (ALENEX, 2002)

A Model for Analyzing Black-Box Optimization. - Vinhthuy T. Phan; Steven Skiena; Pavel Sumazin (WADS, 2003)

Deconvolving Sequence Variation in Mixed DNA Populations. - Andy Wildenberg; Steven Skiena; Pavel Sumazin (J. Comput. Biol., 2003)

Genome-wide prediction and analysis of function-specific transcription factor binding sites. - Fan Long; Hong Liu; Chang S. Hahn; Pavel Sumazin; Michael Q. Zhang; Asher Zilberstein (Silico Biol., 2004)

Shift error detection in standardized exams. - Steven Skiena; Pavel Sumazin (J. Discrete Algorithms, 2004)

Mining ChIP-chip data for transcription factor and cofactor binding sites. - Andrew D. Smith; Pavel Sumazin; Debopriya Das; Michael Q. Zhang (ISMB (Supplement of Bioinformatics), 2005)

Similarity of position frequency matrices for transcription factor binding sites. - Dustin E. Schones; Pavel Sumazin; Michael Q. Zhang (Bioinform., 2005)

DWE: Discriminating Word Enumerator. - Pavel Sumazin; Gengxin Chen; Naoya Hata; Andrew D. Smith; Theresa Zhang; Michael Q. Zhang (Bioinform., 2005)

Lowest common ancestors in trees and directed acyclic graphs. - Michael A. Bender; Martin Farach-Colton; Giridhar Pemmasani; Steven Skiena; Pavel Sumazin (J. Algorithms, 2005)

MOCHI: a comprehensive cross-platform tool for amplicon-based microbiota analysis. - Jun-Jie Zheng; Po-Wen Wang; Tzu-Wen Huang; Yao-Jong Yang; Hua-Sheng Chiu; Pavel Sumazin; Ting-Wen Chen (Bioinform., 2022)

Predictive analysis of COVID-19 occurrence and vaccination impacts across the 50 US states. - Chinmayee Rayguru; Atina Husnayain; Hua-Sheng Chiu; Pavel Sumazin; Emily Chia-Yu Su (Comput. Biol. Medicine, 2025)