The Database of Ribosomal Cross links (DRC). - Pavel V. Baranov; Petr V. Sergiev; Olga A. Dontsova; Alexey A. Bogdanov; Richard Brimacombe (Nucleic Acids Res., 1998)

The Database of Ribosomal Cross-links: an update. - Pavel V. Baranov; Andrew V. Kubarenko; Olga L. Gurvich; Tatyana A. Shamolina; Richard Brimacombe (Nucleic Acids Res., 1999)

RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression. - Pavel V. Baranov; Olga L. Gurvich; Olivier Fayet; Marie Françoise Prère; W. Allen Miller; Raymond F. Gesteland; John F. Atkins; Michael C. Giddings (Nucleic Acids Res., 2001)

RECODE 2003. - Pavel V. Baranov; Olga L. Gurvich; Andrew W. Hammer; Raymond F. Gesteland; John F. Atkins (Nucleic Acids Res., 2003)

ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. - Michaël Bekaert; John F. Atkins; Pavel V. Baranov (Bioinform., 2006)

Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs. - Michaël Bekaert; Ivaylo P. Ivanov; John F. Atkins; Pavel V. Baranov (BMC Bioinform., 2008)

DARNED: a DAtabase of RNa EDiting in humans. - Anmol M. Kiran; Pavel V. Baranov (Bioinform., 2010)

Recode-2: new design, new search tools, and many more genes. - Michaël Bekaert; Andrew E. Firth; Yan Zhang; Vadim N. Gladyshev; John F. Atkins; Pavel V. Baranov (Nucleic Acids Res., 2010)

CodonLogo: a sequence logo-based viewer for codon patterns. - Virag Sharma; David P. Murphy; Gregory M. Provan; Pavel V. Baranov (Bioinform., 2012)

rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments. - Patrick B. F. O'Connor; Gene-Wei Li; Jonathan S. Weissman; John F. Atkins; Pavel V. Baranov (Bioinform., 2013)

GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences. - Ivan Antonov; Pavel V. Baranov; Mark Borodovsky (Nucleic Acids Res., 2013)

Darned in 2013: inclusion of model organisms and linking with Wikipedia. - Anmol M. Kiran; John J. O'Mahony; Komal Sanjeev; Pavel V. Baranov (Nucleic Acids Res., 2013)

Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning. - Audrey M. Michel; Dmitry E. Andreev; Pavel V. Baranov (BMC Bioinform., 2014)

GWIPS-viz: development of a ribo-seq genome browser. - Audrey M. Michel; Gearoid Fox; Anmol M. Kiran; Christof De Bo; Patrick B. F. O'Connor; Stephen M. Heaphy; James P. A. Mullan; Claire A. Donohue; Desmond G. Higgins; Pavel V. Baranov (Nucleic Acids Res., 2014)

Improving data workflow systems with cloud services and use of open data for bioinformatics research. - Md. Rezaul Karim 001; Audrey M. Michel; Achille Zappa; Pavel V. Baranov; Ratnesh Sahay; Dietrich Rebholz-Schuhmann (Briefings Bioinform., 2018)

GWIPS-viz: 2018 update. - Audrey M. Michel; Stephen J. Kiniry; Patrick B. F. O'Connor; James P. A. Mullan; Pavel V. Baranov (Nucleic Acids Res., 2018)

Trips-Viz: a transcriptome browser for exploring Ribo-Seq data. - Stephen J. Kiniry; Patrick B. F. O'Connor; Audrey M. Michel; Pavel V. Baranov (Nucleic Acids Res., 2019)

Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data. - Stephen J. Kiniry; Ciara E. Judge; Audrey M. Michel; Pavel V. Baranov (Nucleic Acids Res., 2021)