GE3: A single FPGA client-server architecture for Golomb Ruler derivation. - Pavlos Malakonakis; Euripides Sotiriades; Apostolos Dollas (FPT, 2010)

CarlOthello : An FPGA-Based Monte Carlo Othello player. - Miltiadis Smerdis; Pavlos Malakonakis; Apostolos Dollas (FPT, 2010)

Exploitation of Parallel Search Space Evaluation with FPGAs in Combinatorial Problems: The Eternity II Case. - Pavlos Malakonakis; Apostolos Dollas (FPL, 2011)

Leveraging Reconfigurable Computing in Distributed Real-time Computation Systems. - Apostolos Nydriotis; Pavlos Malakonakis; Nikos Pavlakis; Grigorios Chrysos 001; Ekaterini Ioannou; Euripides Sotiriades; Minos N. Garofalakis; Apostolos Dollas (EDBT/ICDT Workshops, 2016)

Configure, Generate, Run - Model-based Development for Big Data Processing. - Holger Eichelberger; Claudia Niederée; Apostolos Dollas; Ekaterini Ioannou; Cui Qin; Grigorios Chrysos 001; Christoph Hube; Tuan Tran 002; Apostolos Nydriotis; Pavlos Malakonakis; Stefan Burkhard; Tobias Becker; et al. (EPS, 2016)

Comparing C and SystemC Based HLS Methods for Reconfigurable Systems Design. - Konstantinos Georgopoulos; Pavlos Malakonakis; Nikolaos Tampouratzis; Antonis Nikitakis; Grigorios Chrysos 001; Apostolos Dollas; Dionysios N. Pnevmatikatos; Ioannis Papaefstathiou (ARC, 2018)

HLS Algorithmic Explorations for HPC Execution on Reconfigurable Hardware - ECOSCALE. - Pavlos Malakonakis; Konstantinos Georgopoulos; Aggelos Ioannou; Luciano Lavagno; Ioannis Papaefstathiou; Iakovos Mavroidis (ARC, 2018)

Streaming data correlation on GPUs. - Spyros Fotopoulos; Pavlos Malakonakis; Grigorios Chrysos 001; Apostolos Dollas (MOCAST, 2018)

A performance evaluation of multi-FPGA architectures for computations of information transfer. - Konstantinos Iordanou; Sofia Maria Nikolakaki; Pavlos Malakonakis; Apostolos Dollas (SAMOS, 2018)

Optimized FPGA Implementation of a Compute-Intensive Oil Reservoir Simulation Algorithm. - Aggelos D. Ioannou; Pavlos Malakonakis; Konstantinos Georgopoulos; Ioannis Papaefstathiou; Apostolos Dollas; Iakovos Mavroidis (SAMOS, 2019)

Exploring Modern FPGA Platforms for Faster Phylogeny Reconstruction with RAxML. - Pavlos Malakonakis; Andreas Brokalakis; Nikolaos Alachiotis 001; Euripides Sotiriades; Apostolos Dollas (BIBE, 2020)

A novel FPGA-based system for Tumor Growth Prediction. - Konstantinos Malavazos; Maria Papadogiorgaki; Pavlos Malakonakis; Ioannis Papaefstathiou (DATE, 2020)

Moving Compute towards Data in Heterogeneous multi-FPGA Clusters using Partial Reconfiguration and I/O Virtualisation. - Khoa Dang Pham; Dirk Koch; Anuj Vaishnav; Konstantinos Georgopoulos; Pavlos Malakonakis; Aggelos Ioannou; Iakovos Mavroidis (FPT, 2020)

UNILOGIC: A Novel Architecture for Highly Parallel Reconfigurable Systems. - Aggelos D. Ioannou; Konstantinos Georgopoulos; Pavlos Malakonakis; Dionisios N. Pnevmatikatos; Vassilis D. Papaefstathiou; Ioannis Papaefstathiou; Iakovos Mavroidis (ACM Trans. Reconfigurable Technol. Syst., 2020)

An FPGA-Based Data Pre-Processing Architecture to Accelerate De-Novo Genome Assembly. - Georgios Galanos; Pavlos Malakonakis; Apostolos Dollas (BIBE, 2021)

Novel Reconfigurable Hardware Systems for Tumor Growth Prediction. - Konstantinos Malavazos; Maria Papadogiorgaki; Pavlos Malakonakis; Ioannis Papaefstathiou (ACM Trans. Comput. Heal., 2021)

Accelerating Phylogenetics Using FPGAs in the Cloud. - Nikolaos Alachiotis 001; Andreas Brokalakis; Vasilis Amourgianos; Sotiris Ioannidis; Pavlos Malakonakis; Tasos Bokalidis (IEEE Micro, 2021)

Early Results of Mapping Industrial Applications on Heterogeneous HPC Systems: The OPTIMA Project. - Dimitris Theodoropoulos; Giorgos Pekridis; Panagiotis Miliadis; Chloe Alverti; Panagiotis Mpakos; Dionisios N. Pnevmatikatos; Pavlos Malakonakis; Konstantinos Georgopoulos; Iakovos Mavroidis; Gino Perna; Marisa Zanotti; Giovanni Isotton; et al. (CF, 2023)

Optimizing Industrial Applications for Heterogeneous HPC Systems: The OPTIMA Project Intermediate stage. - Dimitris Theodoropoulos; Olivier Michel; Pavlos Malakonakis; Konstantinos Georgopoulos; Giovanni Isotton; Dionisios N. Pnevmatikatos; Ioannis Papaefstathiou; Gino Perna; Marisa Zanotti; Panagiotis Miliadis; Panagiotis Mpakos; Chloe Alverti; et al. (DATE, 2023)

Open-Source SpMV Multiplication Hardware Accelerator for FPGA-Based HPC Systems. - Panagiotis Mpakos; Ioanna Tasou; Chloe Alverti; Panagiotis Miliadis; Pavlos Malakonakis; Dimitris Theodoropoulos; Georgios I. Goumas; Dionisios N. Pnevmatikatos; Nectarios Koziris (ARC, 2024)

REBECCA: Reconfigurable Heterogeneous Highly Parallel Processing Platform for Safe and Secure AI. - Andreas Brokalakis; Iakovos Mavroidis; Konstantinos Georgopoulos; Pavlos Malakonakis; Konstantinos Harteros; Dimitris Andronikou; Yannis Galanomatis; Charalampos Savvakos; Grigorios Chrysos 001; Sotiris Ioannidis; Ioannis Papaefstathiou (DSD, 2024)