Automatic construction of metabolic models with enzyme constraints. - Pavlos Stephanos Bekiaris; Steffen Klamt (BMC Bioinform., 2020)

Designing microbial communities to maximize the thermodynamic driving force for the production of chemicals. - Pavlos Stephanos Bekiaris; Steffen Klamt (PLoS Comput. Biol., 2021)

CNApy: a CellNetAnalyzer GUI in Python for analyzing and designing metabolic networks. - Sven Thiele; Axel von Kamp; Pavlos Stephanos Bekiaris; Philipp Schneider; Steffen Klamt (Bioinform., 2022)

StrainDesign: a comprehensive Python package for computational design of metabolic networks. - Philipp Schneider; Pavlos Stephanos Bekiaris; Axel von Kamp; Steffen Klamt (Bioinform., 2022)