Visual Analysis of Ligand Trajectories in Molecular Dynamics. - Adam Jurcík; Katarína Furmanová; Jan Byska; Vojtech Vonásek; Ondrej Vávra; Pavol Ulbrich; Helwig Hauser; Barbora Kozlíková (PacificVis, 2019)

LOOPS: Visual Analysis Tool for Non-Periodic Protein Structures. - Pavol Ulbrich; Michal Hornák; Barbora Kozlíková (EuroVis (Posters), 2019)

ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. - María Virginia Sabando; Pavol Ulbrich; Matias Nicolás Selzer; Jan Byska; Jan Mican; Ignacio Ponzoni; Axel J. Soto; Maria Luján Ganuza; Barbora Kozlíková (IEEE Trans. Vis. Comput. Graph., 2021)

LoopGrafter: a web tool for transplanting dynamical loops for protein engineering. - Joan Planas-Iglesias; Filip Opálený; Pavol Ulbrich; Jan Stourac; Zainab K. Sanusi; Gaspar R. P. Pinto; Andrea Schenkmayerova; Jan Byska; Jirí Damborský; Barbora Kozlíková; David Bednar (Nucleic Acids Res., 2022)

sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. - Pavol Ulbrich; Manuela Waldner; Katarína Furmanová; Sérgio M. Marques; David Bednár; Barbora Kozlíková; Jan Byska (IEEE Trans. Vis. Comput. Graph., 2023)

Visual Support for the Loop Grafting Workflow on Proteins. - Filip Opálený; Pavol Ulbrich; Joan Planas-Iglesias; Jan Byska; Jan Stourac; David Bednár; Katarína Furmanová; Barbora Kozlíková (IEEE Trans. Vis. Comput. Graph., 2025)