GRIP: Graph Drawing with Intelligent Placement. - Pawel Gajer; Stephen G. Kobourov (J. Graph Algorithms Appl., 2002)

A multi-dimensional approach to force-directed layouts of large graphs. - Pawel Gajer; Michael T. Goodrich; Stephen G. Kobourov (Comput. Geom., 2004)

Modeling the integration of bacterial rRNA fragments into the human cancer genome. - Karsten B. Sieber; Pawel Gajer; Julie C. Dunning Hotopp (BMC Bioinform., 2016)

SpeciateIT and vSpeciateDB: novel, fast, and accurate per sequence 16S rRNA gene taxonomic classification of vaginal microbiota. - Johanna B. Holm; Pawel Gajer; Jacques Ravel (BMC Bioinform., 2024)

The Geometry of Machine Learning Models. - Pawel Gajer; Jacques Ravel (CoRR, 2025)