Properties of the Genetic Code under Directional, Asymmetric Mutational Pressure. - Malgorzata Dudkiewicz; Pawel Mackiewicz; Aleksandra Nowicka; Maria Kowalczuk; Dorota Mackiewicz; Natalia Polak; Kamila Smolarczyk; Miroslaw R. Dudek; Stanislaw Cebrat (International Conference on Computational Science, 2003)

Correlation between Mutation Pressure, Selection Pressure, and Occurrence of Amino Acids. - Aleksandra Nowicka; Pawel Mackiewicz; Malgorzata Dudkiewicz; Dorota Mackiewicz; Maria Kowalczuk; Stanislaw Cebrat; Miroslaw R. Dudek (International Conference on Computational Science, 2003)

Differential Gene Survival under Asymmetric Directional Mutational Pressure. - Pawel Mackiewicz; Malgorzata Dudkiewicz; Maria Kowalczuk; Dorota Mackiewicz; Joanna Banaszak; Natalia Polak; Kamila Smolarczyk; Aleksandra Nowicka; Miroslaw R. Dudek; Stanislaw Cebrat (International Conference on Computational Science, 2004)

How Gene Survival Depends on Their Length. - Natalia Polak; Joanna Banaszak; Pawel Mackiewicz; Malgorzata Dudkiewicz; Maria Kowalczuk; Dorota Mackiewicz; Kamila Smolarczyk; Aleksandra Nowicka; Miroslaw R. Dudek; Stanislaw Cebrat (International Conference on Computational Science, 2004)

Correspondence between mutation and selection pressure and the genetic code degeneracy in the gene evolution. - Malgorzata Dudkiewicz; Pawel Mackiewicz; Aleksandra Nowicka; Maria Kowalczuk; Dorota Mackiewicz; Natalia Polak; Kamila Smolarczyk; Joanna Banaszak; Miroslaw R. Dudek; Stanislaw Cebrat (Future Gener. Comput. Syst., 2005)

Optimisation of Asymmetric Mutational Pressure and Selection Pressure Around the Universal Genetic Code. - Pawel Mackiewicz; Przemyslaw Biecek; Dorota Mackiewicz; Joanna Kiraga; Krystian Baczkowski; Maciej Sobczynski; Stanislaw Cebrat (ICCS (3), 2008)

Using the Genetic Code Wisdom for Recognizing Protein Coding Sequences. - Pawel Blazej; Pawel Mackiewicz; Stanislaw Cebrat (BIOCOMP, 2010)

Simulation of Bacterial Genome Evolution under Replicational Mutational Pressures. - Pawel Blazej; Pawel Mackiewicz; Stanislaw Cebrat (BIOINFORMATICS, 2012)

Simulation of Prokaryotic Genome Evolution Subjected to Mutational Pressures Associated with DNA Replication. - Pawel Blazej; Pawel Mackiewicz; Stanislaw Cebrat (BIOSTEC (Selected Papers), 2012)

How to Deal with Small Open Reading Frames?. - Malgorzata Wanczyk; Pawel Blazej; Pawel Mackiewicz; Stanislaw Cebrat (BIOINFORMATICS, 2012)

Possible import routes of proteins into the cyanobacterial endosymbionts/plastids of Paulinella chromatophora. - Pawel Mackiewicz; Andrzej Bodyl; Przemyslaw Gagat (Theory Biosci., 2012)

Evolution of Bacterial Genome under Changing Mutational Pressure - Computer Simulation Studies. - Pawel Blazej; Pawel Mackiewicz; Malgorzata Wanczyk; Stanislaw Cebrat (BIOINFORMATICS, 2013)

Using evolutionary algorithms in finding of optimized nucleotide substitution matrices. - Pawel Blazej; Pawel Mackiewicz; Stanislaw Cebrat; Malgorzata Wanczyk (GECCO (Companion), 2013)

Analysis of relationship between amino acid composition of proteins and environmental features of microorganisms using evolutionary algorithm and self-organizing maps. - Maciej Sobczynski; Pawel Mackiewicz (GECCO (Companion), 2013)

Studies of Mutation Accumulation in Three Codon Positions using Monte Carlo Simulations and Metropolis-Hastings Algorithm. - Malgorzata Grabinska; Pawel Blazej; Pawel Mackiewicz (BIOINFORMATICS, 2014)

The role of crossover operator in evolutionary-based approach to the problem of genetic code optimization. - Pawel Blazej; Malgorzata Wnetrzak; Pawel Mackiewicz (Biosyst., 2016)

Representations of Search Spaces in the Problem of Mutational Pressure Optimization According to Protein-Coding Sequences. - Pawel Blazej; Malgorzata Wnetrzak; Malgorzata Grabinska; Pawel Mackiewicz (J. Comput. Biol., 2017)

The Importance of Changes Observed in the Alternative Genetic Codes. - Pawel Blazej; Malgorzata Wnetrzak; Pawel Mackiewicz (BIOINFORMATICS, 2018)

The Impact of the Transversion/Transition Ratio on the Optimal Genetic Code Graph Partition. - Daniyah A. Aloqalaa; Dariusz R. Kowalski; Pawel Blazej; Malgorzata Wnetrzak; Dorota Mackiewicz; Pawel Mackiewicz (BIOINFORMATICS, 2019)

The Properties of the Standard Genetic Code and Its Selected Alternatives in Terms of the Optimal Graph Partition. - Daniyah A. Aloqalaa; Dariusz R. Kowalski; Pawel Blazej; Malgorzata Wnetrzak; Dorota Mackiewicz; Pawel Mackiewicz (BIOSTEC (Selected Papers), 2019)

Optimization of the standard genetic code in terms of two mutation types: Point mutations and frameshifts. - Malgorzata Wnetrzak; Pawel Blazej; Pawel Mackiewicz (Biosyst., 2019)

The influence of different types of translational inaccuracies on the genetic code structure. - Pawel Blazej; Malgorzata Wnetrzak; Dorota Mackiewicz; Pawel Mackiewicz (BMC Bioinform., 2019)

Properties of the Standard Genetic Code and Its Alternatives Measured by Codon Usage from Corresponding Genomes. - Malgorzata Wnetrzak; Pawel Blazej; Pawel Mackiewicz (BIOINFORMATICS, 2020)

The Extension of the Standard Genetic Code via Optimal Codon Blocks Division. - Kuba Nowak; Pawel Blazej; Malgorzata Wnetrzak; Dorota Mackiewicz; Pawel Mackiewicz (BIOINFORMATICS, 2021)

Models of genetic code structure evolution with variable number of coded labels. - Konrad Pawlak; Malgorzata Wnetrzak; Dorota Mackiewicz; Pawel Mackiewicz; Pawel Blazej (Biosyst., 2021)

Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data. - Katarzyna Sidorczuk; Przemyslaw Gagat; Filip Pietluch; Jakub Kala; Dominik Rafacz; Laura Bakala; Jadwiga Slowik; Rafal Kolenda; Stefan Rödiger; Legana C. H. W. Fingerhut; Ira Cooke; Pawel Mackiewicz; et al. (Briefings Bioinform., 2022)