Interoperable and scalable data analysis with microservices: applications in metabolomics. - Payam Emami Khoonsari; Pablo A. Moreno; Sven Bergmann; Joachim Burman; Marco Capuccini; Matteo Carone; Marta Cascante; Pedro de Atauri; Carles Foguet; Alejandra N. González-Beltrán; Thomas Hankemeier; Kenneth Haug; et al. (Bioinform., 2019)

Container-based bioinformatics with Pachyderm. - Jon Ander Novella; Payam Emami Khoonsari; Stephanie Herman; Daniel Whitenack; Marco Capuccini; Joachim Burman; Kim Kultima; Ola Spjuth (Bioinform., 2019)

Approaches for containerized scientific workflows in cloud environments with applications in life science. - Ola Spjuth; Marco Capuccini; Matteo Carone; Anders Larsson; Wesley Schaal; Jon Ander Novella; Oliver Stein; Morgan Ekmefjord; Paolo Di Tommaso; Evan W. Floden; Cédric Notredame; Pablo A. Moreno; et al. (F1000Research, 2021)

GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species. - Verena E. Kutschera; Marcin Kierczak; Tom van der Valk; Johanna von Seth; Nicolas Dussex; Edana Lord; Marianne Dehasque; David W. G. Stanton; Payam Emami Khoonsari; Björn Nystedt; Love Dalén; David Díez-del-Molino (BMC Bioinform., 2022)

Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis. - Akshai P. Sreenivasan; Aina Vaivade; Yassine Noui; Payam Emami Khoonsari; Joachim Burman; Ola Spjuth; Kim Kultima (npj Digit. Medicine, 2025)