PEIMAN 1.0: Post-translational modification Enrichment, Integration and Matching ANalysis. - Payman Nickchi; Mohieddin Jafari; Shiva Kalantari (Database J. Biol. Databases Curation, 2015)

Integrated use of bioinformatic resources reveals that co-targeting of histone deacetylases, IKBK and SRC inhibits epithelial-mesenchymal transition in cancer. - Farnaz Barneh; Mehdi Mirzaie; Payman Nickchi; Tuan Zea Tan; Jean-Paul Thiery; Mehran Piran; Mona Salimi; Fatemeh Goshadrou; Amir R. Aref; Mohieddin Jafari (Briefings Bioinform., 2019)

IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, mapping and mining analysis. - Minoo Ashtiani; Payman Nickchi; Soheil Jahangiri-Tazehkand; Abdollah Safari; Mehdi Mirzaie; Mohieddin Jafari (BMC Bioinform., 2019)