Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data. - Pedro A. F. Galante; Jeff Trimarchi; Constance L. Cepko; Sandro J. de Souza; Lucila Ohno-Machado; Winston Patrick Kuo (Bioinform., 2007)

Evaluation of a large-scale biomedical data annotation initiative. - Ronilda Lacson; Erik Pitzer; Christian Hinske; Pedro A. F. Galante; Lucila Ohno-Machado (BMC Bioinform., 2009)

A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling. - Daniel Guariz Pinheiro; Pedro A. F. Galante; Sandro J. de Souza; Marco A. Zago; Wilson A. Silva Jr. (BMC Bioinform., 2009)

Towards large-scale sample annotation in gene expression repositories. - Erik Pitzer; Ronilda Lacson; Christian Hinske; Jihoon Kim 001; Pedro A. F. Galante; Lucila Ohno-Machado (BMC Bioinform., 2009)

DSGeo: Software tools for cross-platform analysis of gene expression data in GEO. - Ronilda Lacson; Erik Pitzer; Jihoon Kim 001; Pedro A. F. Galante; Christian Hinske; Lucila Ohno-Machado (J. Biomed. Informatics, 2010)

RCPedia: a database of retrocopied genes. - Fábio C. P. Navarro; Pedro A. F. Galante (Bioinform., 2013)

miRIAD - integrating microRNA inter- and intragenic data. - Ludwig Christian G. Hinske; Gustavo S. França; Hugo A. M. Torres; Daniel T. Ohara; Camila Miranda Lopes-Ramos; Jens Heyn; Luiz F. L. Reis; Lucila Ohno-Machado; Simone Kreth; Pedro A. F. Galante (Database J. Biol. Databases Curation, 2014)

MiRIAD update: using alternative polyadenylation, protein interaction network analysis and additional species to enhance exploration of the role of intragenic miRNAs and their host genes. - Christian Hinske; Felipe R. C. dos Santos; Daniel T. Ohara; Lucila Ohno-Machado; Simone Kreth; Pedro A. F. Galante (Database J. Biol. Databases Curation, 2017)

sideRETRO: a pipeline for identifying somatic and polymorphic insertions of processed pseudogenes or retrocopies. - Thiago L. A. Miller; Fernanda Orpinelli Rego; José Leonel L. Buzzo; Pedro A. F. Galante (Bioinform., 2021)