Definition of MHC Supertypes Through Clustering of MHC Peptide Binding Repertoires. - Pedro A. Reche; Ellis L. Reinherz (ICARIS, 2004)

EPIMHC: a curated database of MHC-binding peptides for customized computational vaccinology. - Pedro A. Reche; Hong Zhang; John-Paul Glutting; Ellis L. Reinherz (Bioinform., 2005)

PEPVAC: a web server for multi-epitope vaccine development based on the prediction of supertypic MHC ligands. - Pedro A. Reche; Ellis L. Reinherz (Nucleic Acids Res., 2005)

Recognition and Classification of Histones Using Support Vector Machine. - Manoj Bhasin; Ellis L. Reinherz; Pedro A. Reche (J. Comput. Biol., 2006)

PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery. - Maria Garcia-Boronat; Carmen M. Diez-Rivero; Ellis L. Reinherz; Pedro A. Reche (Nucleic Acids Res., 2008)

Computational analysis and modeling of cleavage by the immunoproteasome and the constitutive proteasome. - Carmen M. Diez-Rivero; Esther M. Lafuente; Pedro A. Reche (BMC Bioinform., 2010)

Classification of MHC I Proteins According to Their Ligand-Type Specificity. - Eduardo Martínez-Naves; Esther M. Lafuente; Pedro A. Reche (ICARIS, 2011)

Towards the knowledge-based design of universal influenza epitope ensemble vaccines. - Qamar M. Sheikh; Derek Gatherer; Pedro A. Reche; Darren R. Flower (Bioinform., 2016)

Optimization and analisys of vaccination schedules using simulated annealing and agent based models. - Marzio Pennisi; Juan A. Sanchez-Lantaron; Pedro A. Reche; Giulia Russo; Francesco Pappalardo 001 (BIBM, 2017)

Introducing scale factor adjustments on agent-based simulations of the immune system. - Juan A. Sanchez-Lantaron; Pedro A. Reche; Marzio Pennisi; Giulia Russo; Francesco Pappalardo 001 (BIBM, 2017)

Computational design of a legacy-based epitope vaccine against Human Cytomegalovirus. - Monica J. Quinzo; Esther M. Lafuente; Pedro A. Reche; Darren R. Flower (BIBM, 2018)

Prediction of proteasomal cleavage sites using PCPS. - Marta Gomez-Perosanz; Alvaro Ras-Carmona; Pedro A. Reche (BIBM, 2019)

Computational assembly of a human Cytomegalovirus vaccine upon experimental epitope legacy. - Monica J. Quinzo; Esther M. Lafuente; Pilar Zuluaga; Darren R. Flower; Pedro A. Reche (BMC Bioinform., 2019)

Computational Immunogenetics. - Marta Gomez-Perosanz; Giulia Russo; Jose Luis Sanchez-Trincado Lopez; Marzio Pennisi; Pedro A. Reche; Adrian J. Shepherd; Francesco Pappalardo 001 (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

Toward computational modelling on immune system function. - Francesco Pappalardo 001; Marzio Pennisi; Pedro A. Reche; Giulia Russo (BMC Bioinform., 2019)

Identification of CD8+ T cell epitopes through proteasome cleavage site predictions. - Marta Gomez-Perosanz; Alvaro Ras-Carmona; Esther M. Lafuente; Pedro A. Reche (BMC Bioinform., 2020)

Toward computational modelling on immune system function. - Francesco Pappalardo 001; Giulia Russo; Pedro A. Reche (BMC Bioinform., 2020)

Correction to: Computational assembly of a human Cytomegalovirus vaccine upon experimental epitope legacy. - Monica J. Quinzo; Esther M. Lafuente; Pilar Zuluaga; Darren R. Flower; Pedro A. Reche (BMC Bioinform., 2020)

Prediction of unconventional protein secretion by exosomes. - Alvaro Ras-Carmona; Marta Gomez-Perosanz; Pedro A. Reche (BMC Bioinform., 2021)

A multi-step and multi-scale bioinformatic protocol to investigate potential SARS-CoV-2 vaccine targets. - Giulia Russo; Valentina Di Salvatore; Giuseppe Sgroi; Giuseppe Alessandro Parasiliti Palumbo; Pedro A. Reche; Francesco Pappalardo 001 (Briefings Bioinform., 2022)

Genetic Algorithm-Based Prediction of Emerging SARS-CoV-2 Variants: A Computational Biology Perspective. - Avisa Maleki; Alvaro Ras-Carmona; Elena Crispino; Valentina Di Salvatore; Giulia Russo; Pedro A. Reche; Francesco Pappalardo 001 (BIBM, 2023)