A General Framework for Thermodynamically Consistent Parameterization and Efficient Sampling of Enzymatic Reactions. - Pedro A. Saa; Lars Keld Nielsen (PLoS Comput. Biol., 2015)

ll-ACHRB: a scalable algorithm for sampling the feasible solution space of metabolic networks. - Pedro A. Saa; Lars Keld Nielsen (Bioinform., 2016)

Fast-SNP: a fast matrix pre-processing algorithm for efficient loopless flux optimization of metabolic models. - Pedro A. Saa; Lars Keld Nielsen (Bioinform., 2016)

Robust control of fed-batch high-cell density cultures: a simulation-based assessment. - Francisco Ibáñez; Pedro A. Saa; Lisbel Bárzaga-Martell; Manuel A. Duarte-Mermoud; Mario Fernández-Fernández; Eduardo Agosin; José Ricardo Pérez-Correa (Comput. Chem. Eng., 2021)

The topology of genome-scale metabolic reconstructions unravels independent modules and high network flexibility. - Verónica S. Martínez; Pedro A. Saa; Jason Jooste; Kanupriya Tiwari; Lake-Ee Quek; Lars Keld Nielsen (PLoS Comput. Biol., 2022)

Reliable calibration and validation of phenomenological and hybrid models of high-cell-density fed-batch cultures subject to metabolic overflow. - Francisco Ibáñez; Hernán Puentes-Cantor; Lisbel Bárzaga-Martell; Pedro A. Saa; Eduardo Agosin; José Ricardo Pérez-Correa (Comput. Chem. Eng., 2024)

LooplessFluxSampler: an efficient toolbox for sampling the loopless flux solution space of metabolic models. - Pedro A. Saa; Sebastian Zapararte; Christopher C. Drovandi; Lars Keld Nielsen (BMC Bioinform., 2024)

METACONE: A scalable framework for exploring the conversion cone of metabolic networks. - Álvaro Altamirano; Ignacio Tapia; Vicente Acuña; Daniel Garrido; Pedro A. Saa (Comput. Biol. Chem., 2026)