Development of Vertebral Metrics - An Instrument to Study the Vertebral Column. - António Jordão; Pedro Duque; Cláudia Quaresma; Pedro Vieira 002 (BIODEVICES, 2011)

A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees. - Hugo López-Fernández; Pedro Duque; Sílvia Henriques; Noé Vázquez; Florentino Fdez-Riverola; Cristina P. Vieira; Miguel Reboiro-Jato; Jorge Vieira (PACBB, 2018)

Inferring Positive Selection in Large Viral Datasets. - Hugo López-Fernández; Pedro Duque; Noé Vázquez; Florentino Fdez-Riverola; Miguel Reboiro-Jato; Cristina P. Vieira; Jorge Vieira (PACBB, 2019)

SEDA: A Desktop Tool Suite for FASTA Files Processing. - Hugo López-Fernández; Pedro Duque; Noé Vázquez; Florentino Fdez-Riverola; Miguel Reboiro-Jato; Cristina P. Vieira; Jorge Vieira (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Auto-phylo: A Pipeline Maker for Phylogenetic Studies. - Hugo López-Fernández; Miguel Pinto; Cristina P. Vieira; Pedro Duque; Miguel Reboiro-Jato; Jorge Vieira (PACBB, 2023)

Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information. - Daniel Glez-Peña; Hugo López-Fernández; Pedro Duque; Cristina P. Vieira; Jorge Vieira (J. Integr. Bioinform., 2024)

Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites. - Hugo López-Fernández; Miguel Pinto; Cristina P. Vieira; Pedro Duque; Miguel Reboiro-Jato; Jorge Vieira (J. Integr. Bioinform., 2024)