MITGARD: an automated pipeline for mitochondrial genome assembly in eukaryotic species using RNA-seq data. - Pedro G. Nachtigall; Felipe G. Grazziotin; Inácio L. M. Junqueira-de-Azevedo (Briefings Bioinform., 2021)

CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts. - Pedro G. Nachtigall; André Y. Kashiwabara; Alan M. Durham (Briefings Bioinform., 2021)

ToxCodAn: a new toxin annotator and guide to venom gland transcriptomics. - Pedro G. Nachtigall; Rhett M. Rautsaw; Schyler A. Ellsworth; Andrew J. Mason; Darin R. Rokyta; Christopher L. Parkinson; Inácio L. M. Junqueira-de-Azevedo (Briefings Bioinform., 2021)