ProFAL: PROtein Functional Annotation through Literature. - Francisco M. Couto; Mário J. Silva; Pedro Coutinho 001 (JISBD, 2003)

Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors. - Francisco M. Couto; Mário J. Silva; Pedro Coutinho 001 (CIKM, 2005)

Finding genomic ontology terms in text using evidence content. - Francisco M. Couto; Mário J. Silva; Pedro Coutinho 001 (BMC Bioinform., 2005)

Validating associations in biological databases. - Francisco M. Couto; Mário J. Silva; Pedro Coutinho 001 (CIKM, 2006)

Measuring semantic similarity between Gene Ontology terms. - Francisco M. Couto; Mário J. Silva; Pedro Coutinho 001 (Data Knowl. Eng., 2007)

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. - Brandi L. Cantarel; Pedro M. Coutinho; Corinne Rancurel; Thomas Bernard; Vincent Lombard; Bernard Henrissat (Nucleic Acids Res., 2009)

The carbohydrate-active enzymes database (CAZy) in 2013. - Vincent Lombard; Hemalatha Golaconda Ramulu; Elodie Drula; Pedro M. Coutinho; Bernard Henrissat (Nucleic Acids Res., 2014)