Improvements on bicriteria pairwise sequence alignment: algorithms and applications. - Maryam Abbasi; Luís Paquete; Arnaud Liefooghe; Miguel Pinheiro; Pedro Matias 001 (Bioinform., 2013)

MOSAL: software tools for multiobjective sequence alignment. - Luís Paquete; Pedro Matias 001; Maryam Abbasi; Miguel Pinheiro (Source Code Biol. Medicine, 2014)

Tracking Paths in Planar Graphs. - David Eppstein; Michael T. Goodrich; James A. Liu; Pedro Matias 001 (ISAAC, 2019)

New Applications of Nearest-Neighbor Chains: Euclidean TSP and Motorcycle Graphs. - Nil Mamano; Alon Efrat; David Eppstein; Daniel Frishberg; Michael T. Goodrich; Stephen G. Kobourov; Pedro Matias 001; Valentin Polishchuk (ISAAC, 2019)

Euclidean TSP, Motorcycle Graphs, and Other New Applications of Nearest-Neighbor Chains. - Alon Efrat; David Eppstein; Daniel Frishberg; Michael T. Goodrich; Stephen G. Kobourov; Nil Mamano; Pedro Matias 001; Valentin Polishchuk (CoRR, 2019)

Reconstructing Biological and Digital Phylogenetic Trees in Parallel. - Ramtin Afshar; Michael T. Goodrich; Pedro Matias 001; Martha C. Osegueda (ESA, 2020)

Reconstructing Binary Trees in Parallel. - Ramtin Afshar; Michael T. Goodrich; Pedro Matias 001; Martha C. Osegueda (SPAA, 2020)

Adaptive Exact Learning in a Mixed-Up World: Dealing with Periodicity, Errors and Jumbled-Index Queries in String Reconstruction. - Ramtin Afshar; Amihood Amir; Michael T. Goodrich; Pedro Matias 001 (SPIRE, 2020)

Parallel Network Mapping Algorithms. - Ramtin Afshar; Michael T. Goodrich; Pedro Matias 001; Martha C. Osegueda (SPAA, 2021)

How to Catch Marathon Cheaters: New Approximation Algorithms for Tracking Paths. - Michael T. Goodrich; Siddharth Gupta 002; Hadi Khodabandeh; Pedro Matias 001 (WADS, 2021)

Exact Learning of Sequences from Queries and Trackers. - Pedro Matias 001 (2021)

Mapping Networks via Parallel kth-Hop Traceroute Queries. - Ramtin Afshar; Michael T. Goodrich; Pedro Matias 001; Martha C. Osegueda (STACS, 2022)

Improved kernels for tracking paths. - Pratibha Choudhary; Michael T. Goodrich; Siddharth Gupta 002; Hadi Khodabandeh; Pedro Matias 001; Venkatesh Raman 001 (Inf. Process. Lett., 2023)