PPR-SSM: personalized PageRank and semantic similarity measures for entity linking. - Andre Lamurias; Pedro Ruas; Francisco M. Couto (BMC Bioinform., 2019)

An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. - Jiayuan He 002; Dat Quoc Nguyen; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Ralph Hoessel; Zubair Afzal; Zenan Zhai; Biaoyan Fang; Hiyori Yoshikawa; Ameer Albahem; Jingqi Wang; et al. (CLEF (Working Notes), 2020)

LasigeBioTM Team at CLEF2020 ChEMU Evaluation Lab: Named Entity Recognition and Event extraction from chemical reactions described in patents using BioBERT NER and RE. - Pedro Ruas; Andre Lamurias; Francisco M. Couto (CLEF (Working Notes), 2020)

Towards a Multilingual Corpus for Named Entity Linking Evaluation in the Clinical Domain. - Pedro Ruas; André Lamúrias; Francisco M. Couto (SIIRH@ECIR, 2020)

COVID-19: A Semantic-Based Pipeline for Recommending Biomedical Entities. - Márcia Barros; Andre Lamurias; Diana F. Sousa; Pedro Ruas; Francisco M. Couto (NLP4COVID@EMNLP, 2020)

LasigeBioTM at CANTEMIST: Named Entity Recognition and Normalization of Tumour Morphology Entities and Clinical Coding of Spanish Health-related Documents. - Pedro Ruas; André Neves; Vitor D. T. Andrade; Francisco M. Couto (IberLEF@SEPLN, 2020)

Linking chemical and disease entities to ontologies by integrating PageRank with extracted relations from literature. - Pedro Ruas; Andre Lamurias; Francisco M. Couto (J. Cheminformatics, 2020)

LASIGE-BioTM at MESINESP2: entity linking with semantic similarity and extreme multi-label classification on Spanish biomedical documents. - Pedro Ruas; Vitor D. T. Andrade; Francisco M. Couto (CLEF (Working Notes), 2021)

Deep Semantic Entity Linking. - Pedro Ruas (ECIR (2), 2021)

Creating Recommender Systems Datasets in Scientific Fields. - Márcia Barros; Francisco M. Couto; Matilde Pato; Pedro Ruas (KDD, 2021)

Lasige-BioTM at ProfNER: BiLSTM-CRF and contextual Spanish embeddings for Named Entity Recognition and Tweet Binary Classification. - Pedro Ruas; Vitor D. T. Andrade; Francisco M. Couto (SMM4H@NAACL-HLT, 2021)

NILINKER: Attention-based approach to NIL Entity Linking. - Pedro Ruas; Francisco M. Couto (J. Biomed. Informatics, 2022)

LASIGE and UNICAGE solution to the NASA LitCoin NLP Competition. - Pedro Ruas; Diana F. Sousa; André Neves; Carlos Cruz; Francisco M. Couto (CoRR, 2023)

Hybrid X-Linker: Automated Data Generation and Extreme Multi-label Ranking for Biomedical Entity Linking. - Pedro Ruas; Fernando Gallego Donoso; Francisco J. Veredas 001; Francisco M. Couto (CoRR, 2024)

Enhancing cross-encoders using knowledge graph hierarchy for medical entity linking in zero- and few-shot scenarios. - Fernando Gallego Donoso; Pedro Ruas; Francisco M. Couto; Francisco J. Veredas 001 (Knowl. Based Syst., 2025)