IT Service Infrastructure for Integrative Systems Biology. - Vasa Curcin; Moustafa Ghanem; Yike Guo; Anthony Rowe 002; Wayne He; Pei Hao; Qiang Lu; Yuanyuan Li (IEEE SCC, 2004)

MPSS: an integrated database system for surveying a set of proteins. - Pei Hao; Wei-Zhong He; Yin Huang; Liang-Xiao Ma; Ying Xu; Hong Xi; Chuan Wang; Boshu Liu; Jin-Miao Wang; Yi-Xue Li; Yang Zhong (Bioinform., 2005)

A molecular docking model of SARS-CoV S1 protein in complex with its receptor, human ACE2. - Yuan Zhang; Nan Zheng; Pei Hao; Ying Cao; Yang Zhong (Comput. Biol. Chem., 2005)

In silico discovery of human natural antisense transcripts. - Yuan-Yuan Li; Lei Qin; Zong-Ming Guo; Lei Liu; Hao Xu; Pei Hao; Jiong Su; Yixiang Shi; Wei-Zhong He; Yi-Xue Li (BMC Bioinform., 2006)

KDE Bioscience: Platform for bioinformatics analysis workflows. - Qiang Lu; Pei Hao; Vasa Curcin; Wei-Zhong He; Yuan-Yuan Li; Qingming Luo; Yike Guo; Yi-Xue Li (J. Biomed. Informatics, 2006)

MPSQ: a web tool for protein-state searching. - Siyuan Zheng; Jia Sheng; Chuan Wang; Xiaojing Wang; Yao Yu; Yun Li; Alex Michie; Jianliang Dai; Yang Zhong; Pei Hao; Lei Liu; Yixue Li (Bioinform., 2008)

Human gene expression sensitivity according to large scale meta-analysis. - Pei Hao; Siyuan Zheng; Jie Ping; Kang Tu; Christian Gieger; Rui Wang-Sattler; Yang Zhong; Yixue Li (BMC Bioinform., 2009)

GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction. - Yao Yu; Kang Tu; Siyuan Zheng; Yun Li; Guohui Ding 001; Jie Ping; Pei Hao; Yixue Li (BMC Bioinform., 2009)

Revealing parasite influence in metabolic pathways in Apicomplexa infected patients. - Tao Xu; Jie Ping; Yao Yu; Fudong Yu; Yongtao Yu; Pei Hao; Xuan Li (BMC Bioinform., 2010)

Association of tissue lineage and gene expression: conservatively and differentially expressed genes define common and special functions of tissues. - Yao Yu; Tao Xu; Yongtao Yu; Pei Hao; Xuan Li (BMC Bioinform., 2010)

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. - Qiong-Yi Zhao; Yi Wang; Yi-Meng Kong; Da Luo; Xuan Li; Pei Hao (BMC Bioinform., 2011)

Association of Feature Gene Expression with Structural Fingerprints of Chemical Compounds. - Yun Li; Kang Tu; Siyuan Zheng; Jingfang Wang; Yixue Li; Pei Hao; Xuan Li (J. Bioinform. Comput. Biol., 2011)

Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome. - Yajun Wang; Yao Yu; Bohu Pan; Pei Hao; Yixue Li; Zhifeng Shao; Xiaogang Xu 005; Xuan Li (BMC Syst. Biol., 2012)

A cross-species analysis method to analyze animal models' similarity to human's disease state. - Shu-Hao Yu; Lulu Zheng; Yun Li; Chunyan Li; Chenchen Ma; Yixue Li; Xuan Li; Pei Hao (BMC Syst. Biol., 2012)

OrysPSSP: a comparative Platform for Small Secreted Proteins from rice and other plants. - Bohu Pan; Jia Sheng; Weining Sun; Yinhong Zhao; Pei Hao; Xuan Li (Nucleic Acids Res., 2013)

De novo assembly of transcriptome from next-generation sequencing data. - Xuan Li; Yi-Meng Kong; Qiong-Yi Zhao; Yuan-Yuan Li; Pei Hao (Quant. Biol., 2016)

Modelling BioNano optical data and simulation study of genome map assembly. - Ping Chen; Xinyun Jing; Jian Ren; Han Cao; Pei Hao; Xuan Li (Bioinform., 2018)

Microbiota in the apical root canal system of tooth with apical periodontitis. - Wenhao Qian; Ting Ma; Mao Ye; Zhiyao Li; Yuanhua Liu; Pei Hao (BMC Genom., 2019)

I Can See the Light: Attacks on Autonomous Vehicles Using Invisible Lights. - Wei Wang 190; Yao Yao 009; Xin Liu 045; Xiang Li; Pei Hao; Ting Zhu 001 (CCS, 2021)

Verification and Redesign of OFDM Backscatter. - Xin Liu 045; Zicheng Chi; Wei Wang 190; Yao Yao 009; Pei Hao; Ting Zhu 001 (NSDI, 2021)

scSensitiveGeneDefine: sensitive gene detection in single-cell RNA sequencing data by Shannon entropy. - Zechuan Chen; Zeruo Yang; Xiaojun Yuan; Xiaoming Zhang; Pei Hao (BMC Bioinform., 2021)

Molecular dynamic simulation analysis of SARS-CoV-2 spike mutations and evaluation of ACE2 from pets and wild animals for infection risk. - Ping Chen; Jingfang Wang; Xintian Xu; Yuping Li; Yan Zhu; Xuan Li; Ming Li; Pei Hao (Comput. Biol. Chem., 2022)

Mixed-Weight Neural Bagging for Detecting $m^6A$ Modifications in SARS-CoV-2 RNA Sequencing. - Ruhan Liu; Liang Ou; Bin Sheng 001; Pei Hao; Ping Li 016; Xiaokang Yang 001; Guangtao Xue; Lei Zhu 003; Yuyang Luo; Ping Zhang 016; Po Yang 001; Huating Li; et al. (IEEE Trans. Biomed. Eng., 2022)

Cell-type deconvolution for bulk RNA-seq data using single-cell reference: a comparative analysis and recommendation guideline. - Xintian Xu; Rui Li; Ouyang Mo; Kai Liu; Justin Li; Pei Hao (Briefings Bioinform., 2024)

High-Granularity Modulation for OFDM Backscatter. - Xin Liu 045; Zicheng Chi; Wei Wang 190; Yao Yao 009; Pei Hao; Ting Zhu 001 (IEEE/ACM Trans. Netw., 2024)

2D and 3D path planning for mobile robots based on improved SSA algorithm. - Mailing Zhang; Pei Hao (Int. J. Intell. Robotics Appl., 2025)