Collaborative Workflow for Analyzing Large-Scale Data for Antimicrobial Resistance: An Experience Report. - Pei-Yu Hou; Jing Ao; Andrew J. Rindos; Shivaramu Keelara; Paula J. Fedorka-Cray; Rada Chirkova (IEEE BigData, 2019)

Compact Walks: Taming Knowledge-Graph Embeddings with Domain- and Task-Specific Pathways. - Pei-Yu Hou; Daniel Robert Korn; Cleber C. Melo-Filho; David R. Wright 001; Alexander Tropsha; Rada Chirkova (SIGMOD Conference, 2022)

BUILD-KG: Integrating Heterogeneous Data Into Analytics-Enabling Knowledge Graphs. - Kara Schatz; Pei-Yu Hou; Alexey V. Gulyuk; Yaroslava G. Yingling; Rada Chirkova (IEEE Big Data, 2023)

Provenance-Aware Data Integration and Summarization Querying for Knowledge Graphs. - Pei-Yu Hou; Jing Ao; Kara Schatz; Alexey V. Gulyuk; Yaroslava G. Yingling; Rada Chirkova (iiWAS, 2023)

FPP-Hunter: Expert-Guided Discovery Of Functional Path Patterns. - Daniel Korn; Jon-Michael Beasley; Kara Schatz; Pei-Yu Hou; Alexander Tropsha; Rada Chirkova (IEEE Big Data, 2024)

Towards Improving the Efficiency of Drug Repurposing by Leveraging Node Promiscuity in Biomedical Knowledge Graphs. - Daniel Korn; Pei-Yu Hou; Kara Schatz; Jon-Michael Beasley; Alexander Tropsha; Rada Chirkova (ACM Trans. Comput. Heal., 2025)