A Markov Random Field Framework for Protein Side-Chain Resonance Assignment. - Jianyang Zeng 001; Pei Zhou 001; Bruce Randall Donald (RECOMB, 2010)

Algorithms and Analytic Solutions Using Sparse Residual Dipolar Couplings for High-Resolution Automated Protein Backbone Structure Determination by NMR. - Anna Yershova; Chittaranjan Tripathy; Pei Zhou 001; Bruce Randall Donald (WAFR, 2010)

Protein Loop Closure Using Orientational Restraints from NMR Data. - Chittaranjan Tripathy; Jianyang Zeng 001; Pei Zhou 001; Bruce Randall Donald (RECOMB, 2011)

A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-Oligomers from NOEs and RDCs. - Jeffrey W. Martin; Anthony K. Yan; Chris Bailey-Kellogg; Pei Zhou 001; Bruce Randall Donald (J. Comput. Biol., 2011)

A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data. - Jianyang Zeng 001; Kyle E. Roberts; Pei Zhou 001; Bruce Randall Donald (J. Comput. Biol., 2011)

Extracting Structural Information from Residual Chemical Shift Anisotropy: Analytic Solutions for Peptide Plane Orientations and Applications to Determine Protein Structure. - Chittaranjan Tripathy; Anthony K. Yan; Pei Zhou 001; Bruce Randall Donald (RECOMB, 2013)

DexDesign: A New OSPREY-Based Algorithm for Designing de novo D-peptide Inhibitors. - Nathan Guerin; Henry Childs; Pei Zhou 001; Bruce Randall Donald (RECOMB, 2024)

Protocol for Designing De Novo Noncanonical Peptide Binders in OSPREY. - Henry Childs; Nathan Guerin; Pei Zhou 001; Bruce Randall Donald (J. Comput. Biol., 2024)