Design of System Area Network Interface Card Based on Intel IOP310. - Xiaojun Yang; Lili Guo; Peiheng Zhang; Ninghui Sun (ICESS, 2004)

Implementation of the Smith-Waterman algorithm on a reconfigurable supercomputing platform. - Peiheng Zhang; Guangming Tan; Guang R. Gao (HPRCTA, 2007)

A Reconfigurable Accelerator for Smith-Waterman Algorithm. - Xianyang Jiang; Xinchun Liu; Lin Xu; Peiheng Zhang; Ninghui Sun (IEEE Trans. Circuits Syst. II Express Briefs, 2007)

Survey on index based homology search algorithms. - Xianyang Jiang; Peiheng Zhang; Xinchun Liu; Stephen S.-T. Yau (J. Supercomput., 2007)

Short read DNA fragment anchoring algorithm. - Wendi Wang 002; Peiheng Zhang; Xinchun Liu (BMC Bioinform., 2009)

Accelerating 2D FFT with Non-Power-of-Two Problem Size on FPGA. - Wendi Wang 002; Bo Duan; Chunming Zhang; Peiheng Zhang; Ninghui Sun (ReConFig, 2010)

Floating-point mixed-radix FFT core generation for FPGA and comparison with GPU and CPU. - Bo Duan; Wendi Wang 002; Xingjian Li 002; Chunming Zhang; Peiheng Zhang; Ninghui Sun (FPT, 2011)

Experience of parallelizing cryo-EM 3D reconstruction on a CPU-GPU heterogeneous system. - Linchuan Li; Xingjian Li 002; Guangming Tan; Mingyu Chen 001; Peiheng Zhang (HPDC, 2011)

Accelerating Millions of Short Reads Mapping on a Heterogeneous Architecture with FPGA Accelerator. - Wen Tang; Wendi Wang 002; Bo Duan; Chunming Zhang; Guangming Tan; Peiheng Zhang; Ninghui Sun (FCCM, 2012)

A coarse-grained stream architecture for cryo-electron microscopy images 3D reconstruction. - Wendi Wang 002; Bo Duan; Wen Tang; Chunming Zhang; Guangming Tan; Peiheng Zhang; Ninghui Sun (FPGA, 2012)

Investigating Memory Optimization of Hash-index for Next Generation Sequencing on Multi-core Architecture. - Wendi Wang 002; Wen Tang; Linchuan Li; Guangming Tan; Peiheng Zhang; Ninghui Sun (IPDPS Workshops, 2012)

Write bandwidth optimization of online Erasure Code based cluster file system. - Lin Yan; Jing Xing; Tian Wang; Zhigang Huo; Jie Ma; Peiheng Zhang (CLUSTER, 2013)

SuperDragon: A Heterogeneous Parallel System for Accelerating 3D Reconstruction of Cryo-Electron Microscopy Images. - Guangming Tan; Chunming Zhang; Wendi Wang 002; Peiheng Zhang (ACM Trans. Reconfigurable Technol. Syst., 2015)

Accelerating Irregular Computation in Massive Short Reads Mapping on FPGA Co-Processor. - Guangming Tan; Chunming Zhang; Wen Tang; Peiheng Zhang; Ninghui Sun (IEEE Trans. Parallel Distributed Syst., 2016)

A Task-Driven Reconfigurable Heterogeneous Computing Platform for Big Data Computing. - Pengfei Yang 001; Quan Wang 006; Peiheng Zhang; Zhike Wang; Lu Fan; Caihong Huang (Big Data (CCF), 2018)

STrieGD: A Sampling Trie Indexed Compression Algorithm for Large-Scale Gene Data. - Yanzhen Gao; Xiaozhen Bao; Jing Xing; Zheng Wei; Jie Ma; Peiheng Zhang (NPC, 2018)

基于AlexNet模型和自适应对比度增强的乳腺结节超声图像分类 (AlexNet Model and Adaptive Contrast Enhancement Based UltrasoundImaging Classification). - Siwen Chen; Yujiang Liu; Dong Liu; Chen Su; Di Zhao; Linxue Qian; Peiheng Zhang (计算机科学, 2019)

Privacy-Enhanced Mean-Variance Scheme Against Malicious Signature Attacks in Smart Grids. - Yuzhu Wang; Peiheng Zhang; Haitao Zhan; Mingwu Zhang (UbiSec, 2021)

Time-Lock Encryption for Multiple Consecutive Periods and its Application. - Yuewu Lian; Haitao Zhan; Peiheng Zhang; Mingwu Zhang (DSC, 2022)

TransCaller: An End-to-end Accelerated Transformer-based Nanopore Basecaller on GPUs. - Di Xu; Peiheng Zhang; Yang Zhang; Shunchen Shi; Xueqi Li 001 (BIBM, 2023)

A secure and privacy-preserving word vector training scheme based on functional encryption with inner-product predicates. - Mingwu Zhang; Zhen-An Li; Peiheng Zhang (Comput. Stand. Interfaces, 2023)

ProXplore: A GPU-Enhanced Protein Discovery Engine. - Zewen Sun; Peiheng Zhang; Xingzhuo Fu; Xueqi Li 001 (BIBM, 2024)

CoPIM: A Collaborative Scheduling Framework for Commodity Processing-in-memory Systems. - Shunchen Shi; Xueqi Li 001; Zhaowu Pan; Peiheng Zhang; Ninghui Sun (ICCD, 2024)

Accelerate Distributed Deep Learning with a Fast Reconfigurable Optical Network. - Wenzhe Li; Guojun Yuan; Zhan Wang 003; Guangming Tan; Peiheng Zhang; George N. Rouskas (OFC, 2024)

Efficient Noninteractive Polynomial Commitment Scheme in the Discrete Logarithm Setting. - Peiheng Zhang; Min Tang; Willy Susilo; Mingwu Zhang (IEEE Internet Things J., 2024)

Fast and scalable all-optical network architecture for distributed deep learning. - Wenzhe Li; Guojun Yuan; Zhan Wang 003; Guangming Tan; Peiheng Zhang; George N. Rouskas (J. Opt. Commun. Netw., 2024)

Toward Scalable RDMA Through Resource Prefetching. - Zhenlong Ma; Ning Kang 007; Fan Yang 096; Chongyang Hong; Jing Xu; Guojun Yuan; Peiheng Zhang; Zhan Wang 003; Ninghui Sun (IEEE Comput. Archit. Lett., 2025)