Demonstration of two novel methods for predicting functional siRNA efficiency. - Peilin Jia; Tieliu Shi; Yudong Cai 001; Yixue Li (BMC Bioinform., 2006)

Pathway and Network Analysis of Schizophrenia Candidate Genes under Meta-Analysis Linkage Peaks. - Peilin Jia; Jingchun Sun; Leng Han; Zhongming Zhao (IJCBS, 2009)

Global Network Features of Cancer Genes in the Human Interactome. - Jingchun Sun; Peilin Jia; Zhongming Zhao (IJCBS, 2009)

A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases-schizophrenia as a case. - Jingchun Sun; Peilin Jia; Ayman H. Fanous; Bradley Todd Webb; Edwin J. C. G. van den Oord; Xiangning Chen; József Bukszár; Kenneth S. Kendler; Zhongming Zhao (Bioinform., 2009)

Investigating microRNA-transcription factor mediated regulatory network in glioblastoma. - Xue Gong; Peilin Jia; Zhongming Zhao (BIBM Workshops, 2010)

Pathway- and network-based analysis of GWAS data revealed susceptibility gene sets to schizophrenia. - Peilin Jia; Zhongming Zhao (BMC Bioinform., 2010)

A Novel microRNA and transcription factor mediated regulatory network in schizophrenia. - An-Yuan Guo; Jingchun Sun; Peilin Jia; Zhongming Zhao (BMC Syst. Biol., 2010)

Assessing gene length biases in gene set analysis of Genome-Wide Association Studies. - Peilin Jia; Jian Tian; Zhongming Zhao (Int. J. Comput. Biol. Drug Des., 2010)

Network-assisted causal gene detection in genome-wide association studies: an improved module search algorithm. - Peilin Jia; Zhongming Zhao (GENSiPS, 2011)

dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks. - Peilin Jia; Siyuan Zheng; Jirong Long; Wei Zheng; Zhongming Zhao (Bioinform., 2011)

An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies. - Lily Wang 001; Peilin Jia; Russell D. Wolfinger; Xi Chen; Britney L. Grayson; Thomas M. Aune; Zhongming Zhao (Bioinform., 2011)

A comprehensive network and pathway analysis of candidate genes in major depressive disorder. - Peilin Jia; Chung-Feng Kao; Po-Hsiu Kuo; Zhongming Zhao (BMC Syst. Biol., 2011)

Do cancer proteins really interact strongly in the human protein-protein interaction network? - Junfeng Xia; Jingchun Sun; Peilin Jia; Zhongming Zhao (Comput. Biol. Chem., 2011)

Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer. - Peilin Jia; Yang Liu; Zhongming Zhao (BMC Syst. Biol., 2012)

Network-Assisted Investigation of Combined Causal Signals from Genome-Wide Association Studies in Schizophrenia. - Peilin Jia; Lily Wang 001; Ayman H. Fanous; Carlos N. Pato; Todd L. Edwards; Zhongming Zhao (PLoS Comput. Biol., 2012)

Network-based mutation analysis of putative cancer genes from next-generation sequencing data. - Peilin Jia; Zhongming Zhao (BIBM, 2013)

Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives. - Qingguo Wang; Junfeng Xia; Peilin Jia; William Pao; Zhongming Zhao (Briefings Bioinform., 2013)

Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives. - Min Zhao 006; Qingguo Wang; Quan Wang 004; Peilin Jia; Zhongming Zhao (BMC Bioinform., 2013)

VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data. - Peilin Jia; Zhongming Zhao (PLoS Comput. Biol., 2014)

EW_dmGWAS: edge-weighted dense module search for genome-wide association studies and gene expression profiles. - Quan Wang 004; Hui Yu; Zhongming Zhao; Peilin Jia (Bioinform., 2015)

A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3, 000 Cancer Genomes across 9 Cancer Types. - Feixiong Cheng; Chuang Liu; Chen-Ching Lin; Junfei Zhao; Peilin Jia; Wen-Hsiung Li; Zhongming Zhao (PLoS Comput. Biol., 2015)

Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action. - Jingchun Sun; Min Zhao 006; Peilin Jia; Lily Wang 001; Yonghui Wu; Carissa Iverson; Yubo Zhou; Erica A. Bowton; Dan M. Roden; Joshua C. Denny; Melinda C. Aldrich; Hua Xu 001; et al. (PLoS Comput. Biol., 2015)

Impacts of somatic mutations on gene expression: an association perspective. - Peilin Jia; Zhongming Zhao (Briefings Bioinform., 2017)

SZGR 2.0: a one-stop shop of schizophrenia candidate genes. - Peilin Jia; Guangchun Han; Junfei Zhao; Pinyi Lu; Zhongming Zhao (Nucleic Acids Res., 2017)

Kinase impact assessment in the landscape of fusion genes that retain kinase domains: a pan-cancer study. - Pora Kim; Peilin Jia; Zhongming Zhao (Briefings Bioinform., 2018)

ANCO-GeneDB: annotations and comprehensive analysis of candidate genes for alcohol, nicotine, cocaine and opioid dependence. - Ruifeng Hu 002; Yulin Dai; Peilin Jia; Zhongming Zhao (Database J. Biol. Databases Curation, 2018)

TissGDB: tissue-specific gene database in cancer. - Pora Kim; Aekyung Park; Guangchun Han; Hua Sun 003; Peilin Jia; Zhongming Zhao (Nucleic Acids Res., 2018)

Distinct telomere length and molecular signatures in seminoma and non-seminoma of testicular germ cell tumor. - Hua Sun 003; Pora Kim; Peilin Jia; Aekyung Park; Han Liang; Zhongming Zhao (Briefings Bioinform., 2019)

Translational bioinformatics in mental health: open access data sources and computational biomarker discovery. - Jessica D. Tenenbaum; Krithika Bhuvaneshwar; Jane P. Gagliardi; Kate Fultz Hollis; Peilin Jia; Liang Ma; Radhakrishnan Nagarajan; Gopalkumar Rakesh; Vignesh Subbian; Shyam Visweswaran; Zhongming Zhao; Leon Rozenblit (Briefings Bioinform., 2019)

CNet: a multi-omics approach to detecting clinically associated, combinatory genomic signatures. - Peilin Jia; Guangsheng Pei; Zhongming Zhao (Bioinform., 2019)

deTS: tissue-specific enrichment analysis to decode tissue specificity. - Guangsheng Pei; Yulin Dai; Zhongming Zhao; Peilin Jia (Bioinform., 2019)

Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA-TF-gene network approach in humans and mice. - Aimin Li; Peilin Jia; Saurav Mallik; Rong Fei; Hiroki Yoshioka; Akiko Suzuki; Junichi Iwata; Zhongming Zhao (Briefings Bioinform., 2020)

6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes. - Hao-Dong Xu; Ruifeng Hu 002; Peilin Jia; Zhongming Zhao (Bioinform., 2020)

TSEA-DB: a trait?tissue association map for human complex traits and diseases. - Peilin Jia; Yulin Dai; Ruifeng Hu 002; Guangsheng Pei; Astrid Marilyn Manuel; Zhongming Zhao (Nucleic Acids Res., 2020)

VISDB: a manually curated database of viral integration sites in the human genome. - Deyou Tang; Bingrui Li; Tianyi Xu; Ruifeng Hu 002; Daqiang Tan; Xiaofeng Song; Peilin Jia; Zhongming Zhao (Nucleic Acids Res., 2020)

Distinct effect of prenatal and postnatal brain expression across 20 brain disorders and anthropometric social traits: a systematic study of spatiotemporal modularity. - Peilin Jia; Astrid Marilyn Manuel; Brisa S. Fernandes; Yulin Dai; Zhongming Zhao (Briefings Bioinform., 2021)

Deep4mC: systematic assessment and computational prediction for DNA N4-methylcytosine sites by deep learning. - Hao-Dong Xu; Peilin Jia; Zhongming Zhao (Briefings Bioinform., 2021)

KinaseMD: kinase mutations and drug response database. - Ruifeng Hu 002; Hao-Dong Xu; Peilin Jia; Zhongming Zhao (Nucleic Acids Res., 2021)

CSEA-DB: an omnibus for human complex trait and cell type associations. - Yulin Dai; Ruifeng Hu 002; Astrid Marilyn Manuel; Andi Liu; Peilin Jia; Zhongming Zhao (Nucleic Acids Res., 2021)

DeepFun: a deep learning sequence-based model to decipher non-coding variant effect in a tissue- and cell type-specific manner. - Guangsheng Pei; Ruifeng Hu 002; Peilin Jia; Zhongming Zhao (Nucleic Acids Res., 2021)

WebCSEA: web-based cell-type-specific enrichment analysis of genes. - Yulin Dai; Ruifeng Hu 002; Andi Liu; Kyung Serk Cho; Astrid Marilyn Manuel; Xiaoyang Li; Xianjun Dong; Peilin Jia; Zhongming Zhao (Nucleic Acids Res., 2022)

CeDR Atlas: a knowledgebase of cellular drug response. - Yin-Ying Wang; Hongen Kang; Tianyi Xu; Lili Hao; Yiming Bao; Peilin Jia (Nucleic Acids Res., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

A Stackelberg Game Approach to the Stability of Networked Switched Systems Under DoS Attacks. - Jie Lian 001; Peilin Jia; Feiyue Wu; Xi Huang (IEEE Trans. Netw. Sci. Eng., 2023)

Brain Catalog: a comprehensive resource for the genetic landscape of brain-related traits. - Siyu Pan; Hongen Kang; Xinxuan Liu; Shiqi Lin; Na Yuan; Zhang Zhang 002; Yiming Bao; Peilin Jia (Nucleic Acids Res., 2023)

Multiobjective Optimization of Networked Switched Systems Subject to DoS Attack Using Artificial Bee Colony Algorithm. - Jie Lian 001; Xiaohan Wang; Dong Wang 003; Peilin Jia (IEEE Trans. Control. Netw. Syst., 2023)

deCS: A Tool for Systematic Cell Type Annotations of Single-cell RNA Sequencing Data among Human Tissues. - Guangsheng Pei; Fangfang Yan; Lukas M. Simon; Yulin Dai; Peilin Jia; Zhongming Zhao (Genom. Proteom. Bioinform., 2023)

Benchmark of embedding-based methods for accurate and transferable prediction of drug response. - Peilin Jia; Ruifeng Hu 002; Zhongming Zhao (Briefings Bioinform., 2023)

An Optimal DoS Attack Strategy With Pause and Restart Rules Under Energy Constraints. - Dong Wang 003; Peilin Jia; Jie Lian 001; Xinyu Pei (IEEE Trans. Control. Netw. Syst., 2023)

Comprehensive assessment of long-read sequencing platforms and calling algorithms for detection of copy number variation. - Na Yuan; Peilin Jia (Briefings Bioinform., 2024)

Optimal Energy Transmission Scheduling in Event-Triggered Redundant Channel of Cyber-Physical Systems Against DoS Attacks. - Peilin Jia; Jie Lian 001; Feiyue Wu; Xinyu Pei (IEEE Trans. Circuits Syst. II Express Briefs, 2024)

Energy-efficient communication strategies for networked control systems against online denial-of-service attacks. - Yi Wang; Yuchen Han; Peilin Jia; Jie Lian 001 (J. Frankl. Inst., 2025)

Finite-Time Prescribed Performance Adaptive Control for a Class of Switched Uncertain Nonlinear Systems. - Wanchen Wang; Jie Lian 001; Peilin Jia; Kang Chen (IEEE Trans Autom. Sci. Eng., 2025)

A Cross-Layer Game-Theoretic Approach to Resilient Control of Networked Switched Systems Against DoS Attacks. - Jie Lian 001; Peilin Jia; Feiyue Wu (IEEE Trans. Cybern., 2025)