BioJS: an open source JavaScript framework for biological data visualization. - John Gómez; Leyla J. García; Gustavo A. Salazar; Jose M. Villaveces; Swanand P. Gore; Alexander García Castro; Maria Jesus Martin; Guillaume Launay; Rafael Alcántara; Noemi del-Toro; Marine Dumousseau; Sandra E. Orchard; et al. (Bioinform., 2013)

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study. - Jose M. Villaveces; Rafael C. Jiménez; Pablo Porras; Noemi del-Toro; Margaret J. Duesbury; Marine Dumousseau; Sandra E. Orchard; H. Choi; Peipei Ping; N. C. Zong; Manor Askenazi; Bianca Habermann; et al. (Database J. Biol. Databases Curation, 2015)

Life-iNet: A Structured Network-Based Knowledge Exploration and Analytics System for Life Sciences. - Xiang Ren 001; Jiaming Shen; Meng Qu; Xuan Wang 008; Zeqiu Wu; Qi Zhu 008; Meng Jiang 001; Fangbo Tao; Saurabh Sinha; David Liem; Peipei Ping; Richard M. Weinshilboum; et al. (ACL (System Demonstrations), 2017)

Reactome enhanced pathway visualization. - Konstantinos Sidiropoulos; Guilherme Viteri; Cristoffer Sevilla; Steven Jupe; Marissa Webber; Marija Orlic-Milacic; Bijay Jassal; Bruce May; Veronica Shamovsky; Corina Duenas; Karen Rothfels; Lisa Matthews; et al. (Bioinform., 2017)

Aztec: A Platform to Render Biomedical Software Findable, Accessible, Interoperable, and Reusable. - Wei Wang 010; Brian Bleakley; Chelsea Ju; Vincent Kyi; Patrick Tan; Howard Choi; Xinxin Huang; Yichao Zhou 001; Justin Wood; Ding Wang; Alex A. T. Bui; Peipei Ping (CoRR, 2017)

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. - Kathleen M. Jagodnik; Simon Koplev; Sherry L. Jenkins; Lucila Ohno-Machado; Benedict Paten; Stephan C. Schürer; Michel Dumontier; Ruben Verborgh; Alex A. T. Bui; Peipei Ping; Neil J. McKenna; Ravi K. Madduri; et al. (J. Biomed. Informatics, 2017)

Reactome diagram viewer: data structures and strategies to boost performance. - Antonio Fabregat; Konstantinos Sidiropoulos; Guilherme Viteri; Pablo Marín-García; Peipei Ping; Lincoln Stein; Peter D'Eustachio; Henning Hermjakob (Bioinform., 2018)

Reactome graph database: Efficient access to complex pathway data. - Antonio Fabregat; Florian Korninger; Guilherme Viteri; Konstantinos Sidiropoulos; Pablo Marín-García; Peipei Ping; Guanming Wu; Lincoln Stein; Peter D'Eustachio; Henning Hermjakob (PLoS Comput. Biol., 2018)

EVIDENCEMINER: Textual Evidence Discovery for Life Sciences. - Xuan Wang 008; Yingjun Guan; Weili Liu; Aabhas Chauhan; Enyi Jiang; Qi Li 012; David Liem; Dibakar Sigdel; John Caufield; Peipei Ping; Jiawei Han 001 (ACL (demo), 2020)

Clinical Temporal Relation Extraction with Probabilistic Soft Logic Regularization and Global Inference. - Yichao Zhou 001; Yu Yan; Rujun Han; J. Harry Caufield; Kai-Wei Chang; Yizhou Sun; Peipei Ping; Wei Wang 010 (AAAI, 2021)

CREATe: Clinical Report Extraction and Annotation Technology. - Yichao Zhou 001; Wei-Ting Chen; Bowen Zhang 002; David Lee; J. Harry Caufield; Kai-Wei Chang; Yizhou Sun; Peipei Ping; Wei Wang 010 (ICDE, 2021)

Clinical Named Entity Recognition using Contextualized Token Representations. - Yichao Zhou 001; Chelsea Ju; J. Harry Caufield; Kevin Shih; Calvin Yu-Chian Chen; Yizhou Sun; Kai-Wei Chang; Peipei Ping; Wei Wang 010 (CoRR, 2021)

Know2BIO: A Comprehensive Dual-View Benchmark for Evolving Biomedical Knowledge Graphs. - Yijia Xiao; Dylan Steinecke; Alexander Russell Pelletier; Yushi Bai; Peipei Ping; Wei Wang 010 (CoRR, 2023)

Health Day: Building Health AI Ecosystem: From Data Harmonization to Knowledge Discovery. - Jake Y. Chen; Peipei Ping (KDD, 2024)

CliBench: Multifaceted Evaluation of Large Language Models in Clinical Decisions on Diagnoses, Procedures, Lab Tests Orders and Prescriptions. - Mingyu Derek Ma; Chenchen Ye 001; Yu Yan; Xiaoxuan Wang; Peipei Ping; Timothy S. Chang; Wei Wang 010 (CoRR, 2024)

Explainable Biomedical Hypothesis Generation via Retrieval Augmented Generation enabled Large Language Models. - Alexander Russell Pelletier; Joseph Ramirez; Irsyad Adam; Simha Sankar; Yu Yan; Ding Wang; Dylan Steinecke; Wei Wang; Peipei Ping (CoRR, 2024)

Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundational Models. - Simha Sankar Baradwaj; Destiny Gilliland; Jack Rincon; Henning Hermjakob; Yu Yan; Irsyad Adam; Gwyneth Lemaster; Dean Wang; Karol E. Watson; Alex A. T. Bui; Wei Wang; Peipei Ping (CoRR, 2024)

Bridge2AI: Building A Cross-disciplinary Curriculum Towards AI-Enhanced Biomedical and Clinical Care. - John Rincon; Alexander Russell Pelletier; Destiny Gilliland; Wei Wang 010; Ding Wang; Simha Sankar Baradwaj; Lori Scott-Sheldon; Samson Gebreab; William Hersh; Parisa Rashidi; Sally Baxter; Wade Schulz; et al. (CoRR, 2025)

STACT-Time: Spatio-Temporal Cross Attention for Cine Thyroid Ultrasound Time Series Classification. - Irsyad Adam; Tengyue Zhang; Steven S. Raman; Zhuyu Qiu; Brandon Taraku; Hexiang Feng; Sile Wang; Ashwath Radhachandran; Shreeram Athreya; Vedrana Ivezic; Peipei Ping; Corey W. Arnold; et al. (CoRR, 2025)

Platform for Representation and Integration of multimodal Molecular Embeddings. - Erika Yilin Zheng; Yu Yan; Simha Sankar Baradwaj; Ethan Ji; Steven S. Raman; Irsyad Adam; Ding Wang; Alexander Russell Pelletier; Alex A. T. Bui; Wei Wang; Peipei Ping (CoRR, 2025)

Atherosclerosis through Hierarchical Explainable Neural Network Analysis. - Irsyad Adam; Steven S. Raman; Erika Yilin; Ethan Ji; William Speier; Dean Wang; Alex A. T. Bui; Wei Wang; Karol E. Watson; Peipei Ping (CoRR, 2025)