Towards Predicting Equilibrium Distributions for Molecular Systems with Deep Learning. - Shuxin Zheng; Jiyan He; Chang Liu 030; Yu Shi; Ziheng Lu; Weitao Feng 001; Fusong Ju; Jiaxi Wang; Jianwei Zhu; Yaosen Min; He Zhang; Shidi Tang; et al. (CoRR, 2023)

Physical Consistency Bridges Heterogeneous Data in Molecular Multi-Task Learning. - Yuxuan Ren; Dihan Zheng; Chang Liu 030; Peiran Jin; Yu Shi; Lin Huang; Jiyan He; Shengjie Luo; Tao Qin 001; Tie-Yan Liu (NeurIPS, 2024)

SFM-Protein: Integrative Co-evolutionary Pre-training for Advanced Protein Sequence Representation. - Liang He 010; Peiran Jin; Yaosen Min; Shufang Xie 003; Lijun Wu 003; Tao Qin 001; Xiaozhuan Liang; Kaiyuan Gao; Yuliang Jiang; Tie-Yan Liu (CoRR, 2024)

Predicting equilibrium distributions for molecular systems with deep learning. - Shuxin Zheng; Jiyan He; Chang Liu 030; Yu Shi; Ziheng Lu; Weitao Feng 001; Fusong Ju; Jiaxi Wang; Jianwei Zhu; Yaosen Min; He Zhang; Shidi Tang; et al. (Nat. Mac. Intell., 2024)

Author Correction: Predicting equilibrium distributions for molecular systems with deep learning. - Shuxin Zheng; Jiyan He; Chang Liu 030; Yu Shi; Ziheng Lu; Weitao Feng 001; Fusong Ju; Jiaxi Wang; Jianwei Zhu; Yaosen Min; He Zhang; Shidi Tang; et al. (Nat. Mac. Intell., 2024)

E2Former: A Linear-time Efficient and Equivariant Transformer for Scalable Molecular Modeling. - Yunyang Li; Lin Huang; Zhihao Ding; Chu Wang; Xinran Wei; Han Yang; Zun Wang; Chang Liu 030; Yu Shi; Peiran Jin; Jia Zhang 004; Mark Gerstein; et al. (CoRR, 2025)

NatureLM: Deciphering the Language of Nature for Scientific Discovery. - Yingce Xia; Peiran Jin; Shufang Xie 003; Liang He 010; Chuan Cao; Renqian Luo; Guoqing Liu; Yue Wang 017; Zequn Liu; Yuan-Jyue Chen; Zekun Guo; Yeqi Bai; et al. (CoRR, 2025)

HybriDNA: A Hybrid Transformer-Mamba2 Long-Range DNA Language Model. - Mingqian Ma; Guoqing Liu; Chuan Cao; Pan Deng; Tri Dao; Albert Gu; Peiran Jin; Zhao Yang 006; Yingce Xia; Renqian Luo; Pipi Hu; Zun Wang; et al. (CoRR, 2025)

Trust Region Preference Approximation: A simple and stable reinforcement learning algorithm for LLM reasoning. - Xuerui Su; Shufang Xie 003; Guoqing Liu; Yingce Xia; Renqian Luo; Peiran Jin; Zhiming Ma; Yue Wang 017; Zun Wang; Yuting Liu 002 (CoRR, 2025)