Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data. - Pelin Gundogdu; Carlos Loucera; Inmaculada Alamo-Alvarez; Joaquín Dopazo; Isabel Nepomuceno (BioData Min., 2022)

Cell-Level Pathway Scoring Comparison with a Biologically Constrained Variational Autoencoder. - Pelin Gundogdu; Miriam Payá-Milans; Inmaculada Alamo-Alvarez; Isabel A. Nepomuceno-Chamorro; Joaquín Dopazo; Carlos Loucera (CMSB, 2023)