The Research of Storage Management and Address Mapping Mechanism in UCard. - Jichang Cao; Peng Qiu; Bin Zhang; Chun Li (CCCT (1), 2004)

Research on the Foundation Protocols of UCard. - Jichang Cao; Bin Zhang; Peng Qiu; Chun Li; Fan Zhang (CCCT (1), 2004)

Ensemble dependence model for classification and prediction of cancer and normal gene expression data. - Peng Qiu; Z. Jane Wang 001; K. J. Ray Liu (Bioinform., 2005)

Dependence model and network for biomarker identification and cancer classification. - Peng Qiu; Z. Jane Wang 001; K. J. Ray Liu (EUSIPCO, 2006)

Mixture principal component analysis for distribution volume parametric imaging in brain PET studies. - Peng Qiu; Z. Jane Wang 001; K. J. Ray Liu (ISBI, 2006)

Polynomial model approach for resynchronization analysis of cell-cycle gene expression data. - Peng Qiu; Z. Jane Wang 001; K. J. Ray Liu (Bioinform., 2006)

Dependence network modeling for biomarker identification. - Peng Qiu; Z. Jane Wang 001; K. J. Ray Liu; Zhang-Zhi Hu; Cathy H. Wu (Bioinform., 2007)

Genomic processing for cancer classification and prediction - Abroad review of the recent advances in model-based genomoric and proteomic signal processing for cancer detection. - Peng Qiu; Z. Jane Wang 001; K. J. Ray Liu (IEEE Signal Process. Mag., 2007)

A robust method for QRS detection based on modified p-spectrum. - Peng Qiu; K. J. Ray Liu (ICASSP, 2008)

Modeling of Neuron Based on Single Electron Transistor. - Peng Qiu; Guanglong Wang; Jianglei Lu; Shuang Feng (CSO (1), 2009)

Fast calculation of pairwise mutual information for gene regulatory network reconstruction. - Peng Qiu; Andrew J. Gentles; Sylvia K. Plevritis (Comput. Methods Programs Biomed., 2009)

Simultaneous Class Discovery and Classification of Microarray Data Using Spectral Analysis. - Peng Qiu; Sylvia K. Plevritis (J. Comput. Biol., 2009)

An Activity-Subspace Approach for Estimating the Integrated Input Function and Relative Distribution Volume in PET Parametric Imaging. - Peng Qiu; Z. Jane Wang 001; K. J. Ray Liu; Zsolt Szabo (IEEE Trans. Inf. Technol. Biomed., 2009)

Dynamic spectrum allocation engine based on DS theory and potential game. - Yun Zhang; Yujun Feng; Di Wu 007; Chenxi Hou; Peng Qiu (ICNC, 2010)

Reducing the Computational Complexity of Information Theoretic Approaches for Reconstructing Gene Regulatory Networks. - Peng Qiu; Andrew J. Gentles; Sylvia K. Plevritis (J. Comput. Biol., 2010)

Discovering Biological Progression Underlying Microarray Samples. - Peng Qiu; Andrew J. Gentles; Sylvia K. Plevritis (PLoS Comput. Biol., 2011)

Reconstructing Directed Signed Gene Regulatory Network From Microarray Data. - Peng Qiu; Sylvia K. Plevritis (IEEE Trans. Biomed. Eng., 2011)

Integrative analysis of methylation and gene expression data in TCGA. - Yihua Liu; Peng Qiu (GENSiPS, 2012)

Toward exhaustive gating of flow cytometry data. - Peng Qiu (GENSiPS, 2012)

CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data. - Michael D. Linderman; Zach Bjornson; Erin F. Simonds; Peng Qiu; Robert V. Bruggner; Ketaki Sheode; Teresa H. Meng; Sylvia K. Plevritis; Garry P. Nolan (Bioinform., 2012)

Identification of markers associated with global changes in DNA methylation regulation in cancers. - Peng Qiu; Li Zhang (BMC Bioinform., 2012)

Optimal experiment selection for parameter estimation in biological differential equation models. - Mark K. Transtrum; Peng Qiu (BMC Bioinform., 2012)

Unsupervised inference of arbor morphology progression for microglia from confocal microscope images. - Yan Xu; Michalis A. Savelonas; Peng Qiu; Kristen Trett; William Shain; Badrinath Roysam (ISBI, 2013)

TreeVis: A MATLAB-based tool for tree visualization. - Peng Qiu; Sylvia K. Plevritis (Comput. Methods Programs Biomed., 2013)

Identification of thresholds for dichotomizing DNA methylation data. - Yihua Liu; Yuan Ji; Peng Qiu (EURASIP J. Bioinform. Syst. Biol., 2013)

Spectral feature selection and its application in high dimensional gene expression studies. - Zixing Wang 003; Peng Qiu; Wenlong Xu; Yin Liu (BCB, 2014)

An iterative algorithm for sampling from manifolds. - Chang-han Rhee; Enlu Zhou; Peng Qiu (WSC, 2014)

Improving the sensitivity of sample clustering by leveraging gene co-expression networks in variable selection. - Zixing Wang 003; F. Anthony San Lucas; Peng Qiu; Yin Liu (BMC Bioinform., 2014)

Unfold High-Dimensional Clouds for Exhaustive Gating of Flow Cytometry Data. - Peng Qiu (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data. - Yanxun Xu; Xiaofeng Zheng; Yuan Yuan 003; Marcos R. Estecio; Jean-Pierre Issa; Peng Qiu; Yuan Ji; Shoudan Liang (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

Flexible power distribution unit - A novel power electronic transformer development and demonstration for distribution system. - Qing Duan; Jianhua Wang 001; Chunyan Ma; Binshi Gu; Baojian Ji; Peng Qiu; Jun You (IECON, 2015)

Unsupervised Discovery of Subspace Trends. - Yan Xu; Peng Qiu; Badrinath Roysam (IEEE Trans. Pattern Anal. Mach. Intell., 2015)

Identification of gene-drug interactions that impact patient survival in TCGA. - John Christian Givhan Spainhour; Peng Qiu (BMC Bioinform., 2016)

Bridging Mechanistic and Phenomenological Models of Complex Biological Systems. - Mark K. Transtrum; Peng Qiu (PLoS Comput. Biol., 2016)

The relative importance of data points in systems biology and parameter estimation. - Jenny Jeong; Peng Qiu (BIBM, 2017)

Long short-term memory recurrent neural networks for antibacterial peptide identification. - Michael Youmans; Christian Spainhour; Peng Qiu (BIBM, 2017)

Graph-based extraction of shape features for leaf classification. - Andrew Zhao; Denis Tsygankov; Peng Qiu (GlobalSIP, 2017)

Power loss and efficiency analysis of non-isolated weinberg converter. - Qian Chen; Peng Qiu; Yi Lu; Haihong Yu; Feng Xu; Kai Tong; Jiazhuo Xuan; Jiayi Wu (IECON, 2017)

Comparison of DC fault handling strategies for hybrid HVDC system. - Yi Lu; Jihong Li; Peng Qiu; Huangqing Xiao; Gaoren Liu; Zheng Xu 011 (IECON, 2017)

Research on flexible medium-voltage DC distribution technology based shore-to-ship power supply system. - Feng Xu; Yi Lu; Xiaohua Xuan; Peng Qiu; Kai Tong; Jiazhuo Xuan; Qian Chen; Daozhuo Jiang (IECON, 2017)

GDISC: a web portal for integrative analysis of gene-drug interaction for survival in cancer. - John Christian Givhan Spainhour; Juho Lim; Peng Qiu (Bioinform., 2017)

Multi-objective service composition model based on cost-effective optimization. - Ying Huo; Peng Qiu; Jiyou Zhai; Dajuan Fan; Huanfeng Peng (Appl. Intell., 2018)

Experimental design and model reduction in systems biology. - Jenny Jeong; Qinwei Zhuang; Mark K. Transtrum; Enlu Zhou; Peng Qiu (Quant. Biol., 2018)

A High-Speed Imaging Method Based on Compressive Sensing for Sound Extraction Using a Low-Speed Camera. - Ge Zhu; Xu-Ri Yao; Zhibin Sun; Peng Qiu; Chao Wang; Guang-Jie Zhai; Qing Zhao (Sensors, 2018)

An Efficient Cell Segmentation Algorithm Based on Unsupervised Clustering and Morphology. - Jing Liu; Dawei Qiu; Xuelan Zhang; Peng Qiu; Yibo Feng; Huifen Li (BIBM, 2019)

Radar and vision fusion for the real-time obstacle detection and identification. - Xinyu Zhang 001; Mo Zhou; Peng Qiu; Yi Huang 038; Jun Li 082 (Ind. Robot, 2019)

Deconvolving multiplexed protease signatures with substrate reduction and activity clustering. - Qinwei Zhuang; Brandon Alexander Holt; Gabriel A. Kwong; Peng Qiu (PLoS Comput. Biol., 2019)

Feature selection algorithms for predicting preeclampsia: A comparative approach. - Jose F. Carreño; Peng Qiu (BIBM, 2020)

Image-based early predictions of functional properties in cell manufacturing. - Hong Seo Lim; Madeline E. Smerchansky; Jingxuan Zhou; Paramita Chatterjee; Angela C. Jimenez; Xingyu Yang; Krishnendu Roy; Peng Qiu (BIBM, 2020)

Leveraging TCGA gene expression data to build predictive models for cancer drug response. - Evan A. Clayton; Toyya A. Pujol; John F. McDonald 002; Peng Qiu (BMC Bioinform., 2020)

On-line reset control of a commercial-scale opposed multi-burner coal-water slurry gasification system using dynamic reduced-order model. - Peng Qiu; Zhenghua Dai; Jianliang Xu; Qinghua Guo; Guangsuo Yu; Fuchen Wang (Comput. Chem. Eng., 2020)

Shape-to-graph mapping method for efficient characterization and classification of complex geometries in biological images. - William Pilcher; Xingyu Yang; Anastasia Zhurikhina; Olga Chernaya; Yinghan Xu; Peng Qiu; Denis Tsygankov (PLoS Comput. Biol., 2020)

Classification of Antibacterial Peptides Using Long Short-Term Memory Recurrent Neural Networks. - Michael Youmans; John Christian Givhan Spainhour; Peng Qiu (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Identification of Protein Markers Predictive of Drug-Specific Survival Outcome in Cancers. - Shuting Lin; Jie Zhou 032; Yiqiong Xiao; Bridget Neary; Yong Teng; Peng Qiu (ISBRA, 2021)

Immune-Microbiota Crosstalk Underlying Inflammatory Bowel Disease. - Congmin Xu; Quoc D. Mac; Qiong Jia; Peng Qiu (ISBRA, 2021)

Prescreening and treatment of aortic dissection through an analysis of infinite-dimension data. - Peng Qiu; Yixuan Li; Kai Liu 039; Jinbao Qin; Kaichuang Ye; Tao Chen 030; Xinwu Lu (BioData Min., 2021)

JSOM: Jointly-evolving self-organizing maps for alignment of biological datasets and identification of related clusters. - Hong Seo Lim; Peng Qiu (PLoS Comput. Biol., 2021)

A contact pressure detection method of isolation switch based on Fiber Bragg Grating. - Zhen Meng; Peng Qiu; Yueming Pan (ICCIR, 2022)

FUSSNet: Fusing Two Sources of Uncertainty for Semi-supervised Medical Image Segmentation. - Jinyi Xiang; Peng Qiu; Yang Yang 030 (MICCAI (8), 2022)

UPCoL: Uncertainty-Informed Prototype Consistency Learning for Semi-supervised Medical Image Segmentation. - Wenjing Lu; Jiahao Lei; Peng Qiu; Rui Sheng; Jinhua Zhou; Xinwu Lu; Yang Yang 030 (MICCAI (4), 2023)

Polycraft World AI Lab (PAL): An Extensible Platform for Evaluating Artificial Intelligence Agents. - Stephen A. Goss; Robert J. Steininger; Dhruv Narayanan; Daniel V. Olivença; Yutong Sun; Peng Qiu; Jim Amato; Eberhard O. Voit; Walter E. Voit; Eric J. Kildebeck (CoRR, 2023)

Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures. - Shunxing Bao; Sichen Zhu; Vasantha L. Kolachala; Lucas W. Remedios; Yeonjoo Hwang; Yutong Sun; Ruining Deng; Can Cui 006; Yike Li; Jia Li 027; Joseph T. Roland; Qi Liu 024; et al. (CoRR, 2023)

Quantitative model for genome-wide cyclic AMP receptor protein binding site identification and characteristic analysis. - Yigang Chen 001; Yang-Chi-Dung Lin; Yijun Luo; Xiao-Xuan Cai; Peng Qiu; Shi-Dong Cui; Zhe Wang; Hsi-Yuan Huang; Hsien-Da Huang (Briefings Bioinform., 2023)

Gene representation in scRNA-seq is correlated with common motifs at the 3′ end of transcripts. - Xinling Li; Greg Gibson; Peng Qiu (Frontiers Bioinform., 2023)

Quantifying Cell-Type-Specific Differences of Single-Cell Datasets Using Uniform Manifold Approximation and Projection for Dimension Reduction and Shapley Additive exPlanations. - Hong Seo Lim; Peng Qiu (J. Comput. Biol., 2023)

BASES: Large-scale Web Search User Simulation with Large Language Model based Agents. - Ruiyang Ren; Peng Qiu; Yingqi Qu; Jing Liu 022; Xin Zhao 018; Hua Wu 003; Ji-Rong Wen; Haifeng Wang 001 (EMNLP (Findings), 2024)

Hierarchical marker genes selection in scRNA-seq analysis. - Yutong Sun; Peng Qiu (PLoS Comput. Biol., 2024)

Quantifying the clusterness and trajectoriness of single-cell RNA-seq data. - Hong Seo Lim; Peng Qiu (PLoS Comput. Biol., 2024)

Integrative multi-omics analyses reveal vesicle transport as a potential target for thoracic aortic aneurysm. - Jiahao Lei; Peng Qiu; Zhaoyu Wu; Angang Ding; Jiateng Hu; Jingli Hou; Yihong Jiang; Hongji Pu; Qun Huang 011; Xing Zhang; Bo Li; Xin Wang; et al. (Comput. Biol. Medicine, 2024)

Gene representation bias in spatial transcriptomics. - Xinling Li; Peng Qiu (J. Bioinform. Comput. Biol., 2024)

Diffusion Generative Modeling for Spatially Resolved Gene Expression Inference from Histology Images. - Sichen Zhu; Yuchen Zhu; Molei Tao; Peng Qiu (ICLR, 2025)

Recursive Clustering of Cellular Diversity in scRNA-Seq Data. - Michael Squires; Peng Qiu (J. Comput. Biol., 2025)

Integrating Pathology Foundation Models and Spatial Transcriptomics for Cellular Decomposition from Histology Images. - Yutong Sun; Sichen Zhu; Peng Qiu (CoRR, 2025)

AmpLyze: A Deep Learning Model for Predicting the Hemolytic Concentration. - Peng Qiu; Hanqi Feng; Barnabás Póczos (CoRR, 2025)

Learning from B Cell Evolution: Adaptive Multi-Expert Diffusion for Antibody Design via Online Optimization. - Hanqi Feng; Peng Qiu; Mengchun Zhang; Yiran Tao; You Fan; Jingtao Xu; Barnabás Póczos (CoRR, 2025)