LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs. - Shangwei Ning; Zuxianglan Zhao; Jingrun Ye; Peng Wang 082; Hui Zhi; Ronghong Li; Tingting Wang; Xia Li 004 (BMC Bioinform., 2014)

miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs. - Peng Wang 082; Hui Zhi; Yunpeng Zhang; Yue Liu; Jizhou Zhang; Yue Gao 004; Maoni Guo; Shangwei Ning; Xia Li 004 (Database J. Biol. Databases Curation, 2015)

Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers. - Shangwei Ning; Jizhou Zhang; Peng Wang 082; Hui Zhi; Jianjian Wang; Yue Liu; Yue Gao 004; Maoni Guo; Ming Yue 003; Lihua Wang 002; Xia Li 004 (Nucleic Acids Res., 2016)

LincSNP 2.0: an updated database for linking disease-associated SNPs to human long non-coding RNAs and their TFBSs. - Shangwei Ning; Ming Yue 003; Peng Wang 082; Yue Liu; Hui Zhi; Yan Zhang; Jizhou Zhang; Yue Gao 004; Maoni Guo; Dianshuang Zhou; Xin Li; Xia Li 004 (Nucleic Acids Res., 2017)

MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases. - Ming Yue 003; Dianshuang Zhou; Hui Zhi; Peng Wang 082; Yan Zhang; Yue Gao 004; Maoni Guo; Xin Li; Yanxia Wang; Yunpeng Zhang; Shangwei Ning; Xia Li 004 (Nucleic Acids Res., 2018)

Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease. - Hui Zhi; Xin Li; Peng Wang 082; Yue Gao 004; Baoqing Gao; Dianshuang Zhou; Yan Zhang; Maoni Guo; Ming Yue 003; Weitao Shen; Shangwei Ning; Lianhong Jin; et al. (Nucleic Acids Res., 2018)

Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers. - Yue Gao 004; Peng Wang 082; Yanxia Wang; Xueyan Ma; Hui Zhi; Dianshuang Zhou; Xin Li; Ying Fang; Weitao Shen; Yingqi Xu; Shipeng Shang; Lihua Wang 002; et al. (Nucleic Acids Res., 2019)

LncACTdb 2.0: an updated database of experimentally supported ceRNA interactions curated from low- and high-throughput experiments. - Peng Wang 082; Xin Li; Yue Gao 004; Qiuyan Guo; Yanxia Wang; Ying Fang; Xueyan Ma; Hui Zhi; Dianshuang Zhou; Weitao Shen; Weisha Liu; Lihua Wang 002; et al. (Nucleic Acids Res., 2019)

Ferryman at SemEval-2020 Task 12: BERT-Based Model with Advanced Improvement Methods for Multilingual Offensive Language Identification. - Weilong Chen; Peng Wang 082; Jipeng Li; Yuanshuai Zheng; Yan Wang 083; Yanru Zhang (SemEval@COLING, 2020)

Ferryman as SemEval-2020 Task 5: Optimized BERT for Detecting Counterfactuals. - Weilong Chen; Yan Zhuang; Peng Wang 082; Feng Hong 005; Yan Wang 083; Yanru Zhang (SemEval@COLING, 2020)

LnCeVar: a comprehensive database of genomic variations that disturb ceRNA network regulation. - Peng Wang 082; Xin Li; Yue Gao 004; Qiuyan Guo; Shangwei Ning; Yunpeng Zhang; Shipeng Shang; Junwei Wang; Yanxia Wang; Hui Zhi; Ying Fang; Weitao Shen; et al. (Nucleic Acids Res., 2020)

LincSNP 3.0: an updated database for linking functional variants to human long non-coding RNAs, circular RNAs and their regulatory elements. - Yue Gao 004; Xin Li; Shipeng Shang; Shuang Guo 001; Peng Wang 082; Dailin Sun; Jing Gan; Jie Sun 021; Yakun Zhang 003; Junwei Wang; Xinyue Wang; Xia Li 004; et al. (Nucleic Acids Res., 2021)

Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data. - Yue Gao 004; Shipeng Shang; Shuang Guo 001; Xin Li; Hanxiao Zhou; Hongjia Liu; Yue Sun; Junwei Wang; Peng Wang 082; Hui Zhi; Xia Li 004; Shangwei Ning; et al. (Nucleic Acids Res., 2021)

LnCeCell: a comprehensive database of predicted lncRNA-associated ceRNA networks at single-cell resolution. - Peng Wang 082; Qiuyan Guo; Yangyang Hao; Qian Liu; Yue Gao 004; Hui Zhi; Xin Li; Shipeng Shang; Shuang Guo 001; Yunpeng Zhang; Shangwei Ning; Xia Li 004 (Nucleic Acids Res., 2021)

Comprehensive characterization genetic regulation and chromatin landscape of enhancer-associated long non-coding RNAs and their implication in human cancer. - Xin Li; Xu Pan; Hanxiao Zhou; Peng Wang 082; Yue Gao 004; Shipeng Shang; Shuang Guo 001; Jie Sun 021; Zhiying Xiong; Shangwei Ning; Hui Zhi; Xia Li 004 (Briefings Bioinform., 2022)

Epigenome signature as an immunophenotype indicator prompts durable clinical immunotherapy benefits in lung adenocarcinoma. - Xu Pan; Caiyu Zhang; Junwei Wang; Peng Wang 082; Yue Gao 004; Shipeng Shang; Shuang Guo 001; Xin Li; Hui Zhi; Shangwei Ning (Briefings Bioinform., 2022)

LncACTdb 3.0: an updated database of experimentally supported ceRNA interactions and personalized networks contributing to precision medicine. - Peng Wang 082; Qiuyan Guo; Yue Qi; Yangyang Hao; Yue Gao 004; Hui Zhi; Yuanfu Zhang; Yue Sun; Yakun Zhang 003; Mengyu Xin; Yunpeng Zhang; Shangwei Ning; et al. (Nucleic Acids Res., 2022)

ENCD: a manually curated database of experimentally supported endocrine system disease and lncRNA associations. - Ming Hao; Yue Qi; Rongji Xu; Kangqi Zhao; Mingqing Li; Yongyan Shan; Tian Xia; Kun Yang; Wuyang Hasi; Cong Zhang; Daowei Li; Yi Wang; et al. (Database J. Biol. Databases Curation, 2023)

CellTracer: a comprehensive database to dissect the causative multilevel interplay contributing to cell development trajectories. - Qiuyan Guo; Peng Wang 082; Qian Liu; Yangyang Hao; Yue Gao 004; Yue Qi; Rongji Xu; Hongyan Chen; Mengyu Xin; Xiaoting Wu; Rui Sun; Hui Zhi; et al. (Nucleic Acids Res., 2023)

CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data. - Congxue Hu; Tengyue Li; Yingqi Xu; Xinxin Zhang; Feng Li; Jing Bai 014; Jing Chen; Wenqi Jiang; Kaiyue Yang; Qi Ou; Xia Li 004; Peng Wang 082; et al. (Nucleic Acids Res., 2023)

Tumor biology, immune infiltration and liver function define seven hepatocellular carcinoma subtypes linked to distinct drivers, survival and drug response. - Ruihong Wu; Yue Gao 004; Xiaoxi Zhao; Shuang Guo 001; Hanxiao Zhou; Yakun Zhang 003; Yaopan Hou; Lan Mei; Hui Zhi; Peng Wang 082; Xia Li 004; Shangwei Ning; et al. (Comput. Biol. Medicine, 2023)

Metabolic-Related Gene Prognostic Index for Predicting Prognosis, Immunotherapy Response, and Candidate Drugs in Ovarian Cancer. - Shuang Guo 001; Yuwei Liu; Yue Sun; Hanxiao Zhou; Yue Gao 004; Peng Wang 082; Hui Zhi; Yakun Zhang 003; Jing Gan; Shangwei Ning (J. Chem. Inf. Model., 2024)

Comprehensive characterization of respiratory genes based on a computational framework in pan-cancer to develop stratified treatment strategies. - Caiyu Zhang; Chenyu Liu; Zhuoru Wang; Di Wang; Wenli Chen; Jian Li; Qianyi Lu; Jiajun Zhou; Yetong Chang; Peng Wang 082; Yue Gao 004; Junwei Wang; et al. (PLoS Comput. Biol., 2025)