Sesame: A new bioinformatics semantic workflow design system. - Lu Zhang; Yunsheng Wang; Pengfei Xuan; Alexander Duvall; Jonathan Lowe; Yanyan Wang; Arvind Subramanian; Pradip K. Srimani; Feng Luo 001; Yongping Duan (BIBM, 2013)

SciFlow: A dataflow-driven model architecture for scientific computing using Hadoop. - Pengfei Xuan; Yueli Zheng; Sapna Sarupria; Amy W. Apon (IEEE BigData, 2013)

Combining Hadoop and GPU to preprocess large Affymetrix microarray data. - Sufeng Niu; Guangyu Yang; Nilim Sarma; Pengfei Xuan; Melissa C. Smith; Pradip K. Srimani; Feng Luo 001 (IEEE BigData, 2014)

Big data analytics on traditional HPC infrastructure using two-level storage. - Pengfei Xuan; Jeffrey Denton; Pradip K. Srimani; Rong Ge 002; Feng Luo 001 (DISCS@SC, 2015)

Big Data Analytics on Traditional HPC Infrastructure Using Two-Level Storage. - Pengfei Xuan; Jeffrey Denton; Feng Luo 001; Pradip K. Srimani (CoRR, 2015)

A de novo genome assembler based on MapReduce and bi-directed de Bruijn graph. - Yuehua Zhang; Pengfei Xuan; Yunsheng Wang; Pradip K. Srimani; Feng Luo 001 (BIBM, 2016)

DynIMS: A Dynamic Memory Controller for In-memory Storage on HPC Systems. - Pengfei Xuan; Feng Luo 001; Rong Ge 002; Pradip K. Srimani (CoRR, 2016)

Dynamic Management of In-memory Storage for Efficiently Integrating Compute- and Data-intensive Computing on HPC Systems. - Pengfei Xuan; Feng Luo 001; Rong Ge 002; Pradip K. Srimani (CCGrid, 2017)

Accelerating big data analytics on HPC clusters using two-level storage. - Pengfei Xuan; Walter B. Ligon III; Pradip K. Srimani; Rong Ge 002; Feng Luo 001 (Parallel Comput., 2017)