Improved rat genome gene prediction by integration of ESTs with RNA-Seq information. - Liping Li; Enguo Chen; Chun Yang; Jun Zhu; Pushkala Jayaraman; Jeff de Pons; Catherine C. Kaczorowski; Howard J. Jacob; Andrew S. Greene; Matthew R. Hodges; Allen W. Cowley Jr.; Mingyu Liang; et al. (Bioinform., 2015)

A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data. - Xiwei Sun; Yi Han; Liyuan Zhou; Enguo Chen; Bingjian Lu; Yong Liu; Xiaoqing Pan; Allen W. Cowley Jr.; Mingyu Liang; Qingbiao Wu; Yan Lu; Pengyuan Liu 003 (Bioinform., 2018)

MDEHT: a multivariate approach for detecting differential expression of microRNA isoform data in RNA-sequencing studies. - Md Amanullah; Mengqian Yu; Xiwei Sun; Aoran Luo; Qing Zhou; Liyuan Zhou; Ling Hou; Wei Wang; Weiguo Lu; Pengyuan Liu 003; Yan Lu (Bioinform., 2020)

WMDS.net: a network control framework for identifying key players in transcriptome programs. - Xiang Cheng; Md Amanullah; Weigang Liu; Yi Liu; Xiaoqing Pan; Honghe Zhang; Haiming Xu; Pengyuan Liu 003; Yan Lu (Bioinform., 2023)

E-value: a superior alternative to P-value and its adjustments in DNA methylation studies. - Yifan Yang 001; Haoyuan Liu; Yi Liu; Liyuan Zhou; Xiaoqi Zheng; Rongxian Yue; David L. Mattson; Srividya Kidambi; Mingyu Liang; Pengyuan Liu 003; Xiaoqing Pan (Briefings Bioinform., 2023)