Multiparametric magnetic resonance imaging analysis of the corticospinal tract in multiple sclerosis. - Daniel S. Reich; Seth A. Smith; Kathleen M. Zackowski; Eliza M. Gordon-Lipkin; Craig K. Jones; Jonathan A. D. Farrell; Susumu Mori; Peter C. M. van Zijl; Peter A. Calabresi (NeuroImage, 2007)

Robust maximum likelihood estimation in Q-space MRI. - Bennett A. Landman; Jonathan A. D. Farrell; Seth A. Smith; Peter A. Calabresi; Peter C. M. van Zijl; Jerry L. Prince (ISBI, 2008)

Tract probability maps in stereotaxic spaces: Analyses of white matter anatomy and tract-specific quantification. - Kegang Hua; Jiangyang Zhang; Setsu Wakana; Hangyi Jiang; Xin Li 007; Daniel S. Reich; Peter A. Calabresi; James J. Pekar; Peter C. M. van Zijl; Susumu Mori (NeuroImage, 2008)

Automated vs. conventional tractography in multiple sclerosis: Variability and correlation with disability. - Daniel S. Reich; Arzu Ozturk; Peter A. Calabresi; Susumu Mori (NeuroImage, 2010)

A topology-preserving approach to the segmentation of brain images with multiple sclerosis lesions. - Navid Shiee; Pierre-Louis Bazin; Arzu Ozturk; Daniel S. Reich; Peter A. Calabresi; Dzung L. Pham (NeuroImage, 2010)

Fiber tractogrophy and tract segmentation in multiple sclerosis lesions. - Navid Shiee; Pierre-Louis Bazin; Peter A. Calabresi; Daniel S. Reich; Dzung L. Pham (ISBI, 2011)

Deformable registration of macular oct using a-mode scan similarity. - Min Chen 006; Andrew Lang; Elias Sotirchos; Howard S. Ying; Peter A. Calabresi; Jerry L. Prince; Aaron Carass (ISBI, 2013)

Intensity standardization of longitudinal images using 4D clustering. - Qing He; Navid Shiee; Daniel S. Reich; Peter A. Calabresi; Dzung L. Pham (ISBI, 2013)

Longitudinal intensity normalization in the presence of multiple sclerosis lesions. - Snehashis Roy; Aaron Carass; Navid Shiee; Dzung L. Pham; Peter A. Calabresi; Daniel S. Reich; Jerry L. Prince (ISBI, 2013)

Voxel-wise displacement as independent features in classification of multiple sclerosis. - Min Chen 006; Aaron Carass; Daniel S. Reich; Peter A. Calabresi; Dzung L. Pham; Jerry L. Prince (Image Processing, 2013)

Segmentation of retinal OCT images using a random forest classifier. - Andrew Lang; Aaron Carass; Elias Sotirchos; Peter A. Calabresi; Jerry L. Prince (Image Processing, 2013)

An adaptive grid for graph-based segmentation in retinal OCT. - Andrew Lang; Aaron Carass; Peter A. Calabresi; Howard S. Ying; Jerry L. Prince (Image Processing, 2014)

Segmentation of microcystic macular edema in Cirrus OCT scans with an exploratory longitudinal study. - Emily K. Swingle; Andrew Lang; Aaron Carass; Omar Al-Louzi; Shiv Saidha; Jerry L. Prince; Peter A. Calabresi (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2015)

Longitudinal graph-based segmentation of macular OCT using fundus alignment. - Andrew Lang; Aaron Carass; Omar Al-Louzi; Pavan Bhargava; Howard S. Ying; Peter A. Calabresi; Jerry L. Prince (Image Processing, 2015)

Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace. - Andrew Lang; Aaron Carass; Bruno M. Jedynak; Sharon D. Solomon; Peter A. Calabresi; Jerry L. Prince (ISBI, 2016)

Voxel based morphometry in optical coherence tomography: validation and core findings. - Bhavna Josephine Antony; Min Chen 006; Aaron Carass; Bruno M. Jedynak; Omar Al-Louzi; Sharon D. Solomon; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes. - Bhavna Josephine Antony; Andrew Lang; Emily K. Swingle; Omar Al-Louzi; Aaron Carass; Sharon D. Solomon; Peter A. Calabresi; Shiv Saidha; Jerry L. Prince (Image Processing, 2016)

Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors. - Jeffrey Glaister; Aaron Carass; Joshua V. Stough; Peter A. Calabresi; Jerry L. Prince (Image Processing, 2016)

Combined registration and motion correction of longitudinal retinal OCT data. - Andrew Lang; Aaron Carass; Omar Al-Louzi; Pavan Bhargava; Sharon D. Solomon; Peter A. Calabresi; Jerry L. Prince (Image Processing, 2016)

Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion. - Mengjin Dong; Ipek Oguz; Nagesh Subbana; Peter A. Calabresi; Russell T. Shinohara; Paul A. Yushkevich (Patch-MI@MICCAI, 2017)

Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation. - Greg M. Fleishman; Alessandra Valcarcel; Dzung L. Pham; Snehashis Roy; Peter A. Calabresi; Paul A. Yushkevich; Russell T. Shinohara; Ipek Oguz (BrainLes@MICCAI, 2017)

Towards Topological Correct Segmentation of Macular OCT from Cascaded FCNs. - Yufan He; Aaron Carass; Yeyi Yun; Can Zhao 001; Bruno M. Jedynak; Sharon D. Solomon; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (FIFI/OMIA@MICCAI, 2017)

Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation. - Ipek Oguz; Aaron Carass; Dzung L. Pham; Snehashis Roy; Nagesh Subbana; Peter A. Calabresi; Paul A. Yushkevich; Russell T. Shinohara; Jerry L. Prince (BrainLes@MICCAI, 2017)

Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort. - Jeffrey Glaister; Aaron Carass; Tziona NessAiver; Joshua V. Stough; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (NeuroImage, 2017)

Multi-layer fast level set segmentation for macular OCT. - Yihao Liu 003; Aaron Carass; Sharon D. Solomon; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (ISBI, 2018)

Deep Harmonization of Inconsistent MR Data for Consistent Volume Segmentation. - Blake E. Dewey; Can Zhao 001; Aaron Carass; Jiwon Oh; Peter A. Calabresi; Peter C. M. van Zijl; Jerry L. Prince (SASHIMI@MICCAI, 2018)

A Deep Learning Based Anti-aliasing Self Super-Resolution Algorithm for MRI. - Can Zhao 001; Aaron Carass; Blake E. Dewey; Jonghye Woo; Jiwon Oh; Peter A. Calabresi; Daniel S. Reich; Pascal Sati; Dzung L. Pham; Jerry L. Prince (MICCAI (1), 2018)

Inter-scanner variation independent descriptors for constrained diffeomorphic demons registration of retina OCT. - Sureerat Reaungamornrat; Aaron Carass; Yufan He; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (Image Processing, 2018)

Topology guaranteed segmentation of the human retina from OCT using convolutional neural networks. - Yufan He; Aaron Carass; Bruno M. Jedynak; Sharon D. Solomon; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (CoRR, 2018)

Multiple Sclerosis Lesion Segmentation from Brain MRI via Fully Convolutional Neural Networks. - Snehashis Roy; John A. Butman; Daniel S. Reich; Peter A. Calabresi; Dzung L. Pham (CoRR, 2018)

Intensity inhomogeneity correction of SD-OCT data using macular flatspace. - Andrew Lang; Aaron Carass; Bruno M. Jedynak; Sharon D. Solomon; Peter A. Calabresi; Jerry L. Prince (Medical Image Anal., 2018)

Projection Artifact Suppression For Inner Retina In Oct Angiography. - Yihao Liu 003; Aaron Carass; Angeliki Filippatou; Yufan He; Sharon D. Solomon; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (ISBI, 2019)

Fully Convolutional Boundary Regression for Retina OCT Segmentation. - Yufan He; Aaron Carass; Yihao Liu 003; Bruno M. Jedynak; Sharon D. Solomon; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (MICCAI (1), 2019)

A Disentangled Latent Space for Cross-Site MRI Harmonization. - Blake E. Dewey; Lianrui Zuo; Aaron Carass; Yufan He; Yihao Liu 003; Ellen M. Mowry; Scott D. Newsome; Jiwon Oh; Peter A. Calabresi; Jerry L. Prince (MICCAI (7), 2020)

Segmenting retinal OCT images with inter-B-scan and longitudinal information. - Yufan He; Aaron Carass; Yihao Liu 003; Angeliki Filippatou; Bruno M. Jedynak; Sharon D. Solomon; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (Image Processing, 2020)

Adversarial domain adaptation for multi-device retinal OCT segmentation. - Yufan He; Aaron Carass; Yihao Liu 003; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (Image Processing, 2020)

Variational intensity cross channel encoder for unsupervised vessel segmentation on OCT angiography. - Yihao Liu 003; Lianrui Zuo; Aaron Carass; Yufan He; Angeliki Filippatou; Sharon D. Solomon; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (Image Processing, 2020)

Monitoring diffuse injury during disease progression in experimental autoimmune encephalomyelitis with on resonance variable delay multiple pulse (onVDMP) CEST MRI. - Aline M. Thomas; Jiadi Xu; Peter A. Calabresi; Peter C. M. van Zijl; Jeff W. M. Bulte (NeuroImage, 2020)

Intensity warping for multisite MRI harmonization. - Julia Wrobel; M. L. Martin; Rohit Bakshi; Peter A. Calabresi; M. Elliot; David R. Roalf; Ruben C. Gur; Raquel E. Gur; Roland G. Henry; Govind Nair; Jiwon Oh; Nico Papinutto; et al. (NeuroImage, 2020)

Information-Based Disentangled Representation Learning for Unsupervised MR Harmonization. - Lianrui Zuo; Blake E. Dewey; Aaron Carass; Yihao Liu 003; Yufan He; Peter A. Calabresi; Jerry L. Prince (IPMI, 2021)

Slice Profile Estimation From 2D MRI Acquisition Using Generative Adversarial Networks. - Shuo Han 001; Aaron Carass; Michael Schär; Peter A. Calabresi; Jerry L. Prince (ISBI, 2021)

Structured layer surface segmentation for retina OCT using fully convolutional regression networks. - Yufan He; Aaron Carass; Yihao Liu 003; Bruno M. Jedynak; Sharon D. Solomon; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (Medical Image Anal., 2021)

SMORE: A Self-Supervised Anti-Aliasing and Super-Resolution Algorithm for MRI Using Deep Learning. - Can Zhao 001; Blake E. Dewey; Dzung L. Pham; Peter A. Calabresi; Daniel S. Reich; Jerry L. Prince (IEEE Trans. Medical Imaging, 2021)

Bi-directional Synthesis of Pre- and Post-contrast MRI via Guided Feature Disentanglement. - Yuan Xue 002; Blake E. Dewey; Lianrui Zuo; Shuo Han 001; Aaron Carass; Peiyu Duan; Samuel W. Remedios; Dzung L. Pham; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (SASHIMI@MICCAI, 2022)

HACA3: A Unified Approach for Multi-site MR Image Harmonization. - Lianrui Zuo; Yihao Liu 003; Yuan Xue 002; Blake E. Dewey; Murat Bilgel; Ellen M. Mowry; Scott D. Newsome; Peter A. Calabresi; Susan M. Resnick; Jerry L. Prince; Aaron Carass (CoRR, 2022)

Disentangled Representation Learning for OCTA Vessel Segmentation With Limited Training Data. - Yihao Liu 003; Aaron Carass; Lianrui Zuo; Yufan He; Shuo Han 001; Lorenzo Gregori; Sean Murray; Rohit Mishra; Jianqin Lei; Peter A. Calabresi; Shiv Saidha; Jerry L. Prince (IEEE Trans. Medical Imaging, 2022)

Rapid Brain Meninges Surface Reconstruction with Layer Topology Guarantee. - Peiyu Duan; Yuan Xue 002; Shuo Han 001; Lianrui Zuo; Aaron Carass; Caitlyn Bernhard; Savannah Hays; Peter A. Calabresi; Susan M. Resnick; James S. Duncan; Jerry L. Prince (ISBI, 2023)

Recurrent Self Fusion: Iterative Denoising for Consistent Retinal OCT Segmentation. - Shuwen Wei; Yihao Liu 003; Zhangxing Bian; Yuli Wang; Lianrui Zuo; Peter A. Calabresi; Shiv Saidha; Jerry L. Prince; Aaron Carass (OMIA@MICCAI, 2023)

HACA3: A unified approach for multi-site MR image harmonization. - Lianrui Zuo; Yihao Liu 003; Yuan Xue 002; Blake E. Dewey; Samuel W. Remedios; Savannah Hays; Murat Bilgel; Ellen M. Mowry; Scott D. Newsome; Peter A. Calabresi; Susan M. Resnick; Jerry L. Prince; et al. (Comput. Medical Imaging Graph., 2023)

Beyond MR Image Harmonization: Resolution Matters Too. - Savannah Hays; Samuel W. Remedios; Lianrui Zuo; Ellen M. Mowry; Scott D. Newsome; Peter A. Calabresi; Aaron Carass; Blake E. Dewey; Jerry L. Prince (SASHIMI@MICCAI, 2024)

PARE: A framework for removal of confounding effects from any distance-based dimension reduction method. - Andrew A. Chen; Kelly Clark; Blake E. Dewey; Anna Duval; Nicole Pellegrini; Govind Nair; Youmna Jalkh; Samar Khalil; Jon Zurawski; Peter A. Calabresi; Daniel S. Reich; Rohit Bakshi; et al. (PLoS Comput. Biol., 2024)