Community landscapes: an integrative approach to determine overlapping network module hierarchy, identify key nodes and predict network dynamics - István A. Kovács; Robin Palotai; Mate S. Szalay; Peter Csermely (CoRR, 2009)

Uniformly curated signaling pathways reveal tissue-specific cross-talks and support drug target discovery. - Tamás Korcsmáros; Illés J. Farkas; Mate S. Szalay; Petra Rovó; Dávid Fazekas; Zoltán Spiró; Csaba Böde; Katalin Lenti; Tibor Vellai; Peter Csermely (Bioinform., 2010)

ModuLand plug-in for Cytoscape: extensively overlapping modules, community centrality and their use in biological networks - Máté Szalay-Beko; Robin Palotai; Balázs Szappanos; István A. Kovács; Balázs Papp; Peter Csermely (CoRR, 2011)

Heat Shock Partially Dissociates the Overlapping Modules of the Yeast Protein-Protein Interaction Network: A Systems Level Model of Adaptation. - Ágoston Mihalik; Peter Csermely (PLoS Comput. Biol., 2011)

ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality. - Máté Szalay-Beko; Robin Palotai; Balázs Szappanos; István A. Kovács; Balázs Papp; Peter Csermely (Bioinform., 2012)

Rigidity and flexibility of biological networks - Merse E. Gaspar; Peter Csermely (CoRR, 2012)

Structure and dynamics of molecular networks: A novel paradigm of drug discovery. A comprehensive review - Peter Csermely; Tamás Korcsmáros; Huba J. M. Kiss; Gabor London; Ruth Nussinov (CoRR, 2012)

Teaching the bioinformatics of signaling networks: an integrated approach to facilitate multi-disciplinary learning. - Tamás Korcsmáros; Zsuzsanna A. Dunai; Tibor Vellai; Peter Csermely (Briefings Bioinform., 2013)

SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks. - Dávid Fazekas; Mihály Koltai; Dénes Türei; Dezsö Módos; Máté Pálfy; Zoltán Dúl; Lilian Zsákai; Máté Szalay-Beko; Katalin Lenti; Illés J. Farkas; Tibor Vellai; Peter Csermely; et al. (BMC Syst. Biol., 2013)

Structure and dynamics of core/periphery networks. - Peter Csermely; András London; Ling-Yun Wu; Brian Uzzi (J. Complex Networks, 2013)

Nodes having a major influence to break cooperation define a novel centrality measure: game centrality - Gabor I. Simko; Peter Csermely (CoRR, 2013)

Perturbation centrality: a novel centrality measure obtained by the general network dynamics tool, Turbine - Kristof Z. Szalay; Peter Csermely (CoRR, 2013)

Fast and slow thinking - of networks: The complementary 'elite' and 'wisdom of crowds' of amino acid, neuronal and social networks. - Peter Csermely (CoRR, 2015)

Plasticity-rigidity cycles: A general adaptation mechanism. - Peter Csermely (CoRR, 2015)

ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis. - Dániel V. Veres; Dávid M. Gyurkó; Benedek Thaler; Kristof Z. Szalay; Dávid Fazekas; Tamás Korcsmáros; Peter Csermely (Nucleic Acids Res., 2015)

The network concept of creativity and deep thinking. Applications to social opinion formation and talent support. - Peter Csermely (CoRR, 2017)

Discovering cooperative biomarkers for heterogeneous complex disease diagnoses. - Duanchen Sun; Xian-Wen Ren; Eszter Ari; Tamás Korcsmáros; Peter Csermely; Ling-Yun Wu (Briefings Bioinform., 2019)

The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks. - Bence Ágg; Andrea Császár; Máté Szalay-Beko; Dániel V. Veres; Réka Mizsei; Péter Ferdinandy; Péter Csermely; István A. Kovács (Bioinform., 2019)

Translocatome: a novel resource for the analysis of protein translocation between cellular organelles. - Péter Mendik; Levente Dobronyi; Ferenc Hári; Csaba Kerepesi; Leonardo Maia-Moço; Donát Buszlai; Peter Csermely; Dániel V. Veres (Nucleic Acids Res., 2019)

Learning of signaling networks: molecular mechanisms. - Péter Csermely; Nina Kunsic; Péter Mendik; Márk Kerestély; Teodóra Faragó; Dániel V. Veres; Peter Tompa (CoRR, 2020)

Synaptic polarity and sign-balance prediction using gene expression data in the Caenorhabditis elegans chemical synapse neuronal connectome network. - Bánk G. Fenyves; Gábor S. Szilágyi; Zsolt Vassy; Csaba Soti; Peter Csermely (PLoS Comput. Biol., 2020)

Efficient link prediction in the protein-protein interaction network using topological information in a generative adversarial network machine learning model. - Olivér M. Balogh; Bettina Benczik; András Horváth; Mátyás Pétervári; Péter Csermely; Péter Ferdinandy; Bence Ágg (BMC Bioinform., 2022)

SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. - Luca Csabai; Dávid Fazekas; Tamás Kadlecsik; Máté Szalay-Beko; Balázs Bohár; Matthew Madgwick; Dezsö Módos; Marton Olbei; Lejla Gul; Padhmanand Sudhakar; János Kubisch; Oyebode J. Oyeyemi; et al. (Nucleic Acids Res., 2022)

Probabilistic edge weights fine-tune Boolean network dynamics. - Dávid Deritei; Nina Kunsic; Péter Csermely (PLoS Comput. Biol., 2022)