Reactome: a knowledgebase of biological pathways. - G. Joshi-Tope; Marc Gillespie; Imre Vastrik; Peter D'Eustachio; Esther Schmidt; Bernard de Bono; Bijay Jassal; Gopal R. Gopinath; G. R. Wu; Lisa Matthews; Suzanna Lewis; Ewan Birney; et al. (Nucleic Acids Res., 2005)

Reactome - A Knowledgebase of Biological Pathways. - Esther Schmidt; Ewan Birney; David Croft 001; Bernard de Bono; Peter D'Eustachio; Marc Gillespie; Gopal Gopinath; Bijay Jassal; Suzanna Lewis; Lisa Matthews; Lincoln Stein; Imre Vastrik; et al. (OTM Workshops (1), 2006)

Reactome: An integrated expert model of human molecular processes and access toolkit. - Bernard de Bono; Imre Vastrik; Peter D'Eustachio; Esther Schmidt; Gopal Gopinath; David Croft 001; Marc Gillespie; Bijay Jassal; Suzanna Lewis; Lisa Matthews; Guanming Wu; Ewan Birney; et al. (J. Integr. Bioinform., 2007)

Reactome knowledgebase of human biological pathways and processes. - Lisa Matthews; Gopal Gopinath; Marc Gillespie; Michael Caudy; David Croft 001; Bernard de Bono; Phani V. Garapati; Jill Hemish; Henning Hermjakob; Bijay Jassal; Alexander Kanapin; Suzanna Lewis; et al. (Nucleic Acids Res., 2009)

The systematic annotation of the three main GPCR families in Reactome. - Bijay Jassal; Steven Jupe; Michael Caudy; Ewan Birney; Lincoln Stein; Henning Hermjakob; Peter D'Eustachio (Database J. Biol. Databases Curation, 2010)

Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools. - Cecilia N. Arighi; Darren A. Natale; Judith A. Blake; Carol J. Bult; Michael Caudy; Alexander D. Diehl; Harold J. Drabkin; Peter D'Eustachio; Alexei V. Evsikov; Hongzhan Huang; Natalia V. Roberts; Alan Ruttenberg; et al. (ICBO, 2011)

The Reactome BioMart. - Robin Haw; David Croft 001; Christina K. Yung; Nelson Ndegwa; Peter D'Eustachio; Henning Hermjakob; Lincoln D. Stein (Database J. Biol. Databases Curation, 2011)

Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations. - Nelson Ndegwa; Richard G. Côté; David Ovelleiro; Peter D'Eustachio; Henning Hermjakob; Juan Antonio Vizcaíno; David Croft 001 (Database J. Biol. Databases Curation, 2011)

The Representation of Protein Complexes in the Protein Ontology (PRO). - Carol J. Bult; Harold J. Drabkin; Alexei V. Evsikov; Darren A. Natale; Cecilia N. Arighi; Natalia V. Roberts; Alan Ruttenberg; Peter D'Eustachio; Barry Smith 001; Judith A. Blake; Cathy H. Wu (BMC Bioinform., 2011)

Reactome: a database of reactions, pathways and biological processes. - David Croft 001; Gavin O'Kelly; Guanming Wu; Robin Haw; Marc Gillespie; Lisa Matthews; Michael Caudy; Phani V. Garapati; Gopal Gopinath; Bijay Jassal; Steven Jupe; Irina Kalatskaya; et al. (Nucleic Acids Res., 2011)

The Protein Ontology: a structured representation of protein forms and complexes. - Darren A. Natale; Cecilia N. Arighi; Winona C. Barker; Judith A. Blake; Carol J. Bult; Michael Caudy; Harold J. Drabkin; Peter D'Eustachio; Alexei V. Evsikov; Hongzhan Huang; Jules Nchoutmboube; Natalia V. Roberts; et al. (Nucleic Acids Res., 2011)

Pathway curation: Application of text-mining tools eGIFT and RLIMS-P. - Carl J. Schmidt; Liang Sun; Cecilia N. Arighi; Keith Decker; K. Vijay-Shanker; Manabu Torii; Catalina O. Tudor; Cathy H. Wu; Peter D'Eustachio (BIBM Workshops, 2012)

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. - Pascale Gaudet; Cecilia N. Arighi; Frederic B. Bastian; Alex Bateman; Judith A. Blake; J. Michael Cherry; Peter D'Eustachio; Robert D. Finn; Michelle G. Giglio; Lynette Hirschman; Renate Kania; William Klimke; et al. (Database J. Biol. Databases Curation, 2012)

The Reactome pathway knowledgebase. - David Croft 001; Antonio Fabregat Mundo; Robin Haw; Marija Milacic; Joel Weiser; Guanming Wu; Michael Caudy; Phani V. Garapati; Marc Gillespie; Maulik R. Kamdar; Bijay Jassal; Steven Jupe; et al. (Nucleic Acids Res., 2014)

Gramene 2013: comparative plant genomics resources. - Marcela K. Monaco; Joshua C. Stein; Sushma Naithani; Sharon Wei; Palitha Dharmawardhana; Sunita Kumari; Vindhya Amarasinghe; Ken Youens-Clark; James Thomason; Justin Preece; Shiran Pasternak; Andrew Olson; et al. (Nucleic Acids Res., 2014)

Protein Ontology: a controlled structured network of protein entities. - Darren A. Natale; Cecilia N. Arighi; Judith A. Blake; Carol J. Bult; Karen R. Christie; Julie Cowart; Peter D'Eustachio; Alexander D. Diehl; Harold J. Drabkin; Olivia Helfer; Hongzhan Huang; Anna Maria Masci; et al. (Nucleic Acids Res., 2014)

Modeling biochemical pathways in the gene ontology. - David P. Hill; Peter D'Eustachio; Tanya Z. Berardini; Christopher J. Mungall; Nikolai Renedo; Judith A. Blake (Database J. Biol. Databases Curation, 2016)

The Reactome pathway Knowledgebase. - Antonio Fabregat; Konstantinos Sidiropoulos; Phani V. Garapati; Marc Gillespie; Kerstin Hausmann; Robin Haw; Bijay Jassal; Steven Jupe; Florian Korninger; Sheldon J. McKay; Lisa Matthews; Bruce May; et al. (Nucleic Acids Res., 2016)

Gramene 2016: comparative plant genomics and pathway resources. - Marcela K. Tello-Ruiz; Joshua C. Stein; Sharon Wei; Justin Preece; Andrew Olson; Sushma Naithani; Vindhya Amarasinghe; Palitha Dharmawardhana; Yinping Jiao; Joseph Mulvaney; Sunita Kumari; Kapeel Chougule; et al. (Nucleic Acids Res., 2016)

Reactome enhanced pathway visualization. - Konstantinos Sidiropoulos; Guilherme Viteri; Cristoffer Sevilla; Steven Jupe; Marissa Webber; Marija Orlic-Milacic; Bijay Jassal; Bruce May; Veronica Shamovsky; Corina Duenas; Karen Rothfels; Lisa Matthews; et al. (Bioinform., 2017)

Reactome pathway analysis: a high-performance in-memory approach. - Antonio Fabregat; Konstantinos Sidiropoulos; Guilherme Viteri; Oscar Forner-Martinez; Pablo Marín-García; Vicente Arnau; Peter D'Eustachio; Lincoln Stein; Henning Hermjakob (BMC Bioinform., 2017)

Plant Reactome: a resource for plant pathways and comparative analysis. - Sushma Naithani; Justin Preece; Peter D'Eustachio; Parul Gupta; Vindhya Amarasinghe; Palitha Dharmawardhana; Guanming Wu; Antonio Fabregat; Justin Elser; Joel Weiser; Maria Keays; Alfonso Muñoz-Pomer Fuentes; et al. (Nucleic Acids Res., 2017)

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. - Darren A. Natale; Cecilia N. Arighi; Judith A. Blake; Jonathan P. Bona; Chuming Chen; Sheng-Chih Chen; Karen R. Christie; Julie Cowart; Peter D'Eustachio; Alexander D. Diehl; Harold J. Drabkin; William D. Duncan; et al. (Nucleic Acids Res., 2017)

Reactome diagram viewer: data structures and strategies to boost performance. - Antonio Fabregat; Konstantinos Sidiropoulos; Guilherme Viteri; Pablo Marín-García; Peipei Ping; Lincoln Stein; Peter D'Eustachio; Henning Hermjakob (Bioinform., 2018)

The Reactome Pathway Knowledgebase. - Antonio Fabregat; Steven Jupe; Lisa Matthews; Konstantinos Sidiropoulos; Marc Gillespie; Phani V. Garapati; Robin Haw; Bijay Jassal; Florian Korninger; Bruce May; Marija Milacic; Corina Duenas; et al. (Nucleic Acids Res., 2018)

Gramene 2018: unifying comparative genomics and pathway resources for plant research. - Marcela K. Tello-Ruiz; Sushma Naithani; Joshua C. Stein; Parul Gupta; Michael Campbell; Andrew Olson; Sharon Wei; Justin Preece; Matthew J. Geniza; Yinping Jiao; Young Koung Lee; Bo Wang 117; et al. (Nucleic Acids Res., 2018)

Reactome graph database: Efficient access to complex pathway data. - Antonio Fabregat; Florian Korninger; Guilherme Viteri; Konstantinos Sidiropoulos; Pablo Marín-García; Peipei Ping; Guanming Wu; Lincoln Stein; Peter D'Eustachio; Henning Hermjakob (PLoS Comput. Biol., 2018)

Reactome and ORCID - fine-grained credit attribution for community curation. - Guilherme Viteri; Lisa Matthews; Thawfeek M. Varusai; Marc Gillespie; Marija Milacic; Justin Cook; Joel Weiser; Solomon Shorser; Konstantinos Sidiropoulos; Antonio Fabregat; Robin Haw; Guanming Wu; et al. (Database J. Biol. Databases Curation, 2019)

The reactome pathway knowledgebase. - Bijay Jassal; Lisa Matthews; Guilherme Viteri; Chuqiao Gong; Pascual Lorente; Antonio Fabregat; Konstantinos Sidiropoulos; Justin Cook; Marc Gillespie; Robin Haw; Fred Loney 001; Bruce May; et al. (Nucleic Acids Res., 2020)

Plant Reactome: a knowledgebase and resource for comparative pathway analysis. - Sushma Naithani; Parul Gupta; Justin Preece; Peter D'Eustachio; Justin Elser; Priyanka Garg; Daemon A. Dikeman; Jason Kiff; Justin Cook; Andrew Olson; Sharon Wei; Marcela K. Tello-Ruiz; et al. (Nucleic Acids Res., 2020)

Reactome and the Gene Ontology: digital convergence of data resources. - Benjamin M. Good; Kimberly Van Auken; David P. Hill; Huaiyu Mi; Seth Carbon; James P. Balhoff; Laurent-Philippe Albou; Paul D. Thomas; Christopher J. Mungall; Judith A. Blake; Peter D'Eustachio (Bioinform., 2021)

The Gene Ontology resource: enriching a GOld mine. - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. - Marcela K. Tello-Ruiz; Sushma Naithani; Parul Gupta; Andrew Olson; Sharon Wei; Justin Preece; Yinping Jiao; Bo Wang 117; Kapeel Chougule; Priyanka Garg; Justin Elser; Sunita Kumari; et al. (Nucleic Acids Res., 2021)

The reactome pathway knowledgebase 2022. - Marc Gillespie; Bijay Jassal; Ralf Stephan; Marija Milacic; Karen Rothfels; Andrea Senff-Ribeiro; Johannes Griss; Cristoffer Sevilla; Lisa Matthews; Chuqiao Gong; Chuan Deng; Thawfeek M. Varusai; et al. (Nucleic Acids Res., 2022)

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. - Marija Orlic-Milacic; Karen Rothfels; Lisa Matthews; Adam J. Wright; Bijay Jassal; Veronica Shamovsky; Quang M. Trinh; Marc Gillespie; Cristoffer Sevilla; Krishna Tiwari; Eliot Ragueneau; Chuqiao Gong; et al. (Database J. Biol. Databases Curation, 2024)

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. - Marija Orlic-Milacic; Karen Rothfels; Lisa Matthews; Adam J. Wright; Bijay Jassal; Veronica Shamovsky; Quang M. Trinh; Marc Gillespie; Cristoffer Sevilla; Krishna Tiwari; Eliot Ragueneau; Chuqiao Gong; et al. (Zenodo, 2024)