Finding potential DNA-binding compounds by using molecular shape. - Peter D. J. Grootenhuis; Diana C. Roe; Peter A. Kollman; Irwin D. Kuntz (J. Comput. Aided Mol. Des., 1994)

Functionality map analysis of the active site cleft of human thrombin. - Peter D. J. Grootenhuis; Martin Karplus (J. Comput. Aided Mol. Des., 1996)

Practical Evaluation of Comparative Modelling and Threading Methods. - M. J. L. Schoonman; Ronald M. A. Knegtel; Peter D. J. Grootenhuis (Comput. Chem., 1998)

Comparative molecular field analysis and energy interaction studies of thrombin-inhibitor complexes. - Roberta Bursi; Peter D. J. Grootenhuis (J. Comput. Aided Mol. Des., 1999)

Comparison of two implementations of the incremental construction algorithm in flexible docking of thrombin inhibitors. - Ronald M. A. Knegtel; Denis M. Bayada; Richard A. Engh; Wolfgang von der Saal; Vincent J. van Geerestein; Peter D. J. Grootenhuis (J. Comput. Aided Mol. Des., 1999)