MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution. - Jun Wang 052; Peter D. Keightley; Toby Johnson (BMC Bioinform., 2006)

Understanding the Degradation of Hominid Gene Control. - Peter D. Keightley; Martin J. Lercher; Adam Eyre-Walker (PLoS Comput. Biol., 2006)