Computational prediction of N-linked glycosylation incorporating structural properties and patterns. - Gwo-Yu Chuang; Jeffrey C. Boyington; M. Gordon Joyce; Jiang Zhu; Gary J. Nabel; Peter D. Kwong; Ivelin Georgiev (Bioinform., 2012)

NEP: web server for epitope prediction based on antibody neutralization of viral strains with diverse sequences. - Gwo-Yu Chuang; David Liou; Peter D. Kwong; Ivelin Georgiev (Nucleic Acids Res., 2014)

Structure and immune recognition of trimeric pre-fusion HIV-1 Env. - Marie Pancera; Tongqing Zhou; Aliaksandr Druz; Ivelin S. Georgiev; Cinque S. Soto; Jason Gorman; Jinghe Huang; Priyamvada Acharya; Gwo-Yu Chuang; Gilad Ofek; Guillaume B. E. Stewart-Jones; Jonathan Stuckey; et al. (Nat., 2014)

: Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial. - Paul Thatcher Edlefsen; Morgane Rolland; Tomer Hertz; Sodsai Tovanabutra; Andrew J. Gartland; Allan C. deCamp; Craig A. Magaret; Hasan Ahmed; Raphael Gottardo; Michal Juraska; Connor McCoy; Brendan B. Larsen; et al. (PLoS Comput. Biol., 2015)

Effects of Darwinian Selection and Mutability on Rate of Broadly Neutralizing Antibody Evolution during HIV-1 Infection. - Zizhang Sheng; Chaim A. Schramm; Mark Connors; Lynn Morris; John R. Mascola; Peter D. Kwong; Lawrence Shapiro (PLoS Comput. Biol., 2016)

PaRSnIP: sequence-based protein solubility prediction using gradient boosting machine. - Reda Rawi; Raghvendra Mall; Khalid Kunji; Chen-Hsiang Shen; Peter D. Kwong; Gwo-Yu Chuang (Bioinform., 2018)

CRISPro: An Automated Pipeline for Protein Conformation Stabilization by Proline. - Reda Rawi; Chen-Hsiang Shen; Peter D. Kwong; Gwo-Yu Chuang (J. Chem. Inf. Model., 2018)

GLYCO: a tool to quantify glycan shielding of glycosylated proteins. - Myungjin Lee; Mateo Reveiz; Reda Rawi; Peter D. Kwong; Gwo-Yu Chuang (Bioinform., 2022)