On the min-transitive approximation of symmetric fuzzy relations. - Peter Dawyndt; Hans E. De Meyer; Bernard De Baets (FUZZ-IEEE, 2004)

Improving interoperability between microbial information and sequence databases. - Paolo Romano 001; Peter Dawyndt; Francesca Piersigilli; Jean Swings (BMC Bioinform., 2005)

The complete linkage clustering algorithm revisited. - Peter Dawyndt; Hans E. De Meyer; Bernard De Baets (Soft Comput., 2005)

Knowledge Accumulation and Resolution of Data Inconsistencies during the Integration of Microbial Information Sources. - Peter Dawyndt; Marc Vancanneyt; Hans E. De Meyer; Jean Swings (IEEE Trans. Knowl. Data Eng., 2005)

A Knuckles-and-Nodes Approach to the Integration of Microbiological Resource Data. - Bart Van Brabant; Peter Dawyndt; Bernard De Baets; Paul De Vos (OTM Workshops (1), 2006)

UPGMA clustering revisited: A weight-driven approach to transitive approximation. - Peter Dawyndt; Hans E. De Meyer; Bernard De Baets (Int. J. Approx. Reason., 2006)

StrainInfo.net Web Services: Enabling Microbiologic Workflows Such as Phylogenetic Tree Building and Biomarker Comparison. - Bert Verslyppe; Bram Slabbinck; Wim De Smet; Paul De Vos; Bernard De Baets; Peter Dawyndt (eScience, 2008)

TaxonGap: a visualization tool for intra- and inter-species variation among individual biomarkers. - Bram Slabbinck; Peter Dawyndt; M. Martens; Paul De Vos; Bernard De Baets (Bioinform., 2008)

Bayesian Clustering of Fuzzy Feature Vectors Using a Quasi-Likelihood Approach. - Pekka Marttinen; Jing Tang 002; Bernard De Baets; Peter Dawyndt; Jukka Corander (IEEE Trans. Pattern Anal. Mach. Intell., 2009)

From learning taxonomies to phylogenetic learning: Integration of 16S rRNA gene data into FAME-based bacterial classification. - Bram Slabbinck; Willem Waegeman; Peter Dawyndt; Paul De Vos; Bernard De Baets (BMC Bioinform., 2010)

Semantic integration of isolation habitat and location in StrainInfo. - Bert Verslyppe; Wim De Smet; Paul De Vos; Bernard De Baets; Peter Dawyndt (BMC Bioinform., 2010)

Accurate Long Read Mapping using Enhanced Suffix Arrays. - Michaël Vyverman; Joachim M. De Schrijver; Wim Van Criekinge; Peter Dawyndt; Veerle Fack (BIOINFORMATICS, 2011)

essaMEM: finding maximal exact matches using enhanced sparse suffix arrays. - Michaël Vyverman; Bernard De Baets; Veerle Fack; Peter Dawyndt (Bioinform., 2013)

Fast and Accurate cDNA Mapping and Splice Site Identification. - Michaël Vyverman; Dieter De Smedt; Yao-Cheng Lin; Lieven Sterck; Bernard De Baets; Veerle Fack; Peter Dawyndt (BIOINFORMATICS, 2014)

A Long Fragment Aligner called ALFALFA. - Michaël Vyverman; Bernard De Baets; Veerle Fack; Peter Dawyndt (BMC Bioinform., 2015)

Unipept web services for metaproteomics analysis. - Bart Mesuere; Toon Willems; Felix Van der Jeugt; Bart Devreese; Peter Vandamme; Peter Dawyndt (Bioinform., 2016)

Unipept CLI 2.0: adding support for visualizations and functional annotations. - Pieter Verschaffelt; Philippe Van Thienen; Tim Van Den Bossche; Felix Van der Jeugt; Caroline De Tender; Lennart Martens; Peter Dawyndt; Bart Mesuere (Bioinform., 2020)

Unipept Visualizations: an interactive visualization library for biological data. - Pieter Verschaffelt; James H. Collier; Alexander Botzki; Lennart Martens; Peter Dawyndt; Bart Mesuere (Bioinform., 2022)

FragGeneScanRs: faster gene prediction for short reads. - Felix Van der Jeugt; Peter Dawyndt; Bart Mesuere (BMC Bioinform., 2022)

Dolos: Language-agnostic plagiarism detection in source code. - Rien Maertens; Charlotte Van Petegem; Niko Strijbol; Toon Baeyens; Arne Carla Jacobs; Peter Dawyndt; Bart Mesuere (J. Comput. Assist. Learn., 2022)

Dolos 2.0: Towards Seamless Source Code Plagiarism Detection in Online Learning Environments. - Rien Maertens; Peter Dawyndt; Bart Mesuere (ITiCSE (2), 2023)

Dodona: Learn to Code with a Virtual Co-teacher that Supports Active Learning. - Charlotte Van Petegem; Peter Dawyndt; Bart Mesuere (ITiCSE (2), 2023)

Blink: An Educational Software Debugger for Scratch. - Niko Strijbol; Christophe Scholliers; Peter Dawyndt (ITiCSE (2), 2023)

TESTed - An educational testing framework with language-agnostic test suites for programming exercises. - Niko Strijbol; Charlotte Van Petegem; Rien Maertens; Boris Sels; Christophe Scholliers; Peter Dawyndt; Bart Mesuere (SoftwareX, 2023)

Dodona: Learn to code with a virtual co-teacher that supports active learning. - Charlotte Van Petegem; Rien Maertens; Niko Strijbol; Jorg Van Renterghem; Felix Van der Jeugt; Bram de Wever; Peter Dawyndt; Bart Mesuere (SoftwareX, 2023)

Mining patterns in syntax trees to automate code reviews of student solutions for programming exercises. - Charlotte Van Petegem; Kasper Demeyere; Rien Maertens; Niko Strijbol; Bram de Wever; Bart Mesuere; Peter Dawyndt (CoRR, 2024)

Discovering and exploring cases of educational source code plagiarism with Dolos. - Rien Maertens; Maarten Van Neyghem; Maxiem Geldhof; Charlotte Van Petegem; Niko Strijbol; Peter Dawyndt; Bart Mesuere (SoftwareX, 2024)

Reproducing Predictive Learning Analytics in CS1: Toward Generalizable and Explainable Models for Enhancing Student Retention. - Denis Zhidkikh; Ville Heilala; Charlotte Van Petegem; Peter Dawyndt; Miitta Järvinen; Sami Viitanen; Bram de Wever; Bart Mesuere; Vesa Lappalainen; Lauri Kettunen; Raija Hämäläinen (J. Learn. Anal., 2024)

Blink: An educational software debugger for Scratch. - Niko Strijbol; Robbe De Proft; Klaas Goethals; Bart Mesuere; Peter Dawyndt; Christophe Scholliers (SoftwareX, 2024)

Source Code Plagiarism Detection as a Service with Dolos. - Rien Maertens; Peter Dawyndt; Bart Mesuere (ITiCSE (2), 2025)

Are LLMs Good at Answering Student Questions in CS1 Courses? - Thomas Van Mullem; Bart Mesuere; Peter Dawyndt (ITiCSE (2), 2025)