BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives. - Daniel Becker 006; Pavlo Lutsik; Peter Ebert; Christoph Bock; Thomas Lengauer; Jörn Walter (Nucleic Acids Res., 2014)

A general concept for consistent documentation of computational analyses. - Peter Ebert; Fabian Müller 001; Karl Nordström; Thomas Lengauer; Marcel H. Schulz (Database J. Biol. Databases Curation, 2015)

All Fingers Are Not the Same: Handling Variable-Length Sequences in a Discriminative Setting Using Conformal Multi-Instance Kernels. - Sarvesh Nikumbh; Peter Ebert; Nico Pfeifer (WABI, 2017)

Ten Simple Rules for Developing Usable Software in Computational Biology. - Markus List; Peter Ebert; Felipe Albrecht (PLoS Comput. Biol., 2017)

What we leave behind. - Peter Ebert (2018)

TEPIC 2 - an extended framework for transcription factor binding prediction and integrative epigenomic analysis. - Florian Schmidt 003; Fabian Kern; Peter Ebert; Nina Baumgarten; Marcel H. Schulz (Bioinform., 2019)

An Environment for Sustainable Research Software in Germany and Beyond: Current State, Open Challenges, and Call for Action. - Hartwig Anzt; Felix Bach; Stephan Druskat; Frank Löffler 001; Axel Loewe; Bernhard Y. Renard; Gunnar Seemann; Alexander Struck; Elke Achhammer; Piush Aggarwal; Franziska Appel; Michael Bader; et al. (CoRR, 2020)

An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action. - Hartwig Anzt; Felix Bach; Stephan Druskat; Frank Löffler 001; Axel Loewe; Bernhard Y. Renard; Gunnar Seemann; Alexander Struck; Elke Achhammer; Piush Aggarwal; Franziska Appel; Michael Bader; et al. (F1000Research, 2020)

Fast detection of differential chromatin domains with SCIDDO. - Peter Ebert; Marcel H. Schulz (Bioinform., 2021)

ASHLEYS: automated quality control for single-cell Strand-seq data. - Christina Gros; Ashley D. Sanders; Jan O. Korbel; Tobias Marschall; Peter Ebert (Bioinform., 2021)