Representation and Manipulation of Genomic Tuples in R. - Peter F. Hickey (J. Open Source Softw., 2016)

CellBench: R/Bioconductor software for comparing single-cell RNA-seq analysis methods. - Shian Su; Luyi Tian; Xueyi Dong; Peter F. Hickey; Saskia Freytag; Matthew E. Ritchie (Bioinform., 2020)

Tximeta: Reference sequence checksums for provenance identification in RNA-seq. - Michael I. Love; Charlotte Soneson; Peter F. Hickey; Lisa K. Johnson; N. Tessa Pierce; Lori A. Shepherd; Martin Morgan; Rob Patro (PLoS Comput. Biol., 2020)

NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data. - Shian Su; Quentin Gouil; Marnie E. Blewitt; Dianne Cook; Peter F. Hickey; Matthew E. Ritchie (PLoS Comput. Biol., 2021)