cTAP: A Machine Learning Framework for Predicting Target Genes of a Transcription Factor using a Cohort of Gene Expression Data Sets. - Honglin Wang; Pujan Joshi; Seung-Hyun Hong; Peter F. Maye; David W. Rowe; Dong-Guk Shin (BIBM, 2020)

rCom: a route-based framework inferring cell type communication and regulatory network using single cell data. - Honglin Wang; Pujan Joshi; Chenyu Zhang 007; Peter F. Maye; David W. Rowe; Dong-Guk Shin (BCB, 2022)